Variant report

Variant	rs867611
Chromosome Location	chr11:85776544-85776545
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:85762145..85764012-chr11:85775530..85778515,2	MCF-7	breast:
2	chr11:85775759..85778337-chr11:85946507..85948966,2	K562	blood:
3	chr11:85775786..85777864-chr11:85954494..85956140,2	MCF-7	breast:
4	chr11:85775018..85777414-chr11:85781077..85783520,2	K562	blood:
5	chr11:85776467..85780584-chr11:85902948..85906650,5	MCF-7	breast:
6	chr11:85755134..85758081-chr11:85773891..85777241,3	K562	blood:
7	chr11:85773252..85777138-chr11:85860597..85863727,3	K562	blood:
8	chr11:85774766..85777240-chr11:85903999..85905671,2	K562	blood:
9	chr11:85775017..85777690-chr11:85953768..85955485,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000074266	Chromatin interaction
ENSG00000254502	Chromatin interaction
ENSG00000254699	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10751134	1.00[JPT][hapmap]
rs10792830	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs10792831	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs10792832	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs10898438	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs10898439	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs1214669	0.90[ASN][1000 genomes]
rs1898895	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs1949221	0.85[ASN][1000 genomes]
rs1973630	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2508381	0.85[ASN][1000 genomes]
rs2508691	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2508692	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2508693	0.88[ASN][1000 genomes]
rs2508696	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2508697	0.86[ASN][1000 genomes]
rs3016240	0.92[ASN][1000 genomes]
rs3016786	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3851178	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs3851179	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs475639	0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs478711	0.81[ASN][1000 genomes]
rs480781	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs484154	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs488134	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs493254	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4944560	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs497816	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs519778	0.92[ASN][1000 genomes]
rs526904	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs529904	0.81[ASN][1000 genomes]
rs532470	0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs535590	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs536841	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs541458	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs541674	0.85[ASN][1000 genomes]
rs542126	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs545592	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs547767	0.87[AFR][1000 genomes]
rs553141	0.84[ASN][1000 genomes]
rs561646	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs561655	0.84[CHB][hapmap];0.83[AMR][1000 genomes]
rs565719	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs572979	0.84[ASN][1000 genomes]
rs587038	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs602222	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs606505	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs609903	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs613222	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs629343	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs631639	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs636355	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs636772	0.82[ASN][1000 genomes]
rs639012	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs642949	0.83[ASN][1000 genomes]
rs645299	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs647422	0.92[ASN][1000 genomes]
rs659023	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs659863	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs666682	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs669556	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs669813	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs671686	0.85[ASN][1000 genomes]
rs673751	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs676733	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs677869	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs677909	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs682928	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs683494	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs694011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7114331	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs7114401	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs7129687	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs7941541	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs7951988	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035489	chr11:85502953-85778229	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	esv1829985	chr11:85740319-85789350	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85764400-85777000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:85765600-85777800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:85768800-85776600	Enhancers	Liver	Liver
4	chr11:85769400-85777200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr11:85770400-85776600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:85770800-85776600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:85770800-85776600	Weak transcription	Stomach Mucosa	stomach
8	chr11:85770800-85776800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:85770800-85777600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr11:85770800-85778200	Weak transcription	Gastric	stomach
11	chr11:85771200-85776600	Enhancers	HepG2	liver
12	chr11:85772200-85777400	Weak transcription	Colonic Mucosa	Colon
13	chr11:85772400-85776600	Weak transcription	Aorta	Aorta
14	chr11:85772600-85776600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:85772800-85776600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:85772800-85777200	Enhancers	Primary B cells from peripheral blood	blood
17	chr11:85773200-85776600	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr11:85773200-85776600	Active TSS	K562	blood
19	chr11:85773200-85778200	Weak transcription	Pancreas	Pancrea
20	chr11:85773400-85777600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:85773600-85776800	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr11:85773600-85777800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:85773600-85778800	Weak transcription	Spleen	Spleen
24	chr11:85773600-85781000	Active TSS	Right Ventricle	heart
25	chr11:85773800-85777000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:85773800-85780600	Active TSS	Breast Myoepithelial Primary Cells	Breast
27	chr11:85773800-85780600	Active TSS	GM12878-XiMat	blood
28	chr11:85774000-85776800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr11:85774000-85777400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr11:85774400-85776600	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr11:85774600-85777000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
32	chr11:85774800-85776600	Enhancers	Primary hematopoietic stem cells	blood
33	chr11:85774800-85776600	Enhancers	Rectal Mucosa Donor 29	rectum
34	chr11:85774800-85777000	Flanking Active TSS	Adipose Nuclei	Adipose
35	chr11:85775000-85776800	Flanking Active TSS	NHEK	skin
36	chr11:85775000-85780600	Active TSS	Stomach Smooth Muscle	stomach
37	chr11:85775200-85776600	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr11:85775200-85776800	Weak transcription	Rectal Smooth Muscle	rectum
39	chr11:85775200-85777200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
40	chr11:85775200-85779200	Flanking Active TSS	Primary B cells from cord blood	blood
41	chr11:85775400-85776600	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr11:85775400-85776600	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr11:85775400-85776600	Enhancers	Primary T cells from cord blood	blood
44	chr11:85775400-85776600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr11:85775400-85776600	Weak transcription	Fetal Heart	heart
46	chr11:85775400-85776600	Weak transcription	Fetal Kidney	kidney
47	chr11:85775400-85776600	Enhancers	Dnd41	blood
48	chr11:85775400-85777000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
49	chr11:85775400-85777000	Enhancers	Fetal Intestine Large	intestine
50	chr11:85775400-85778000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

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