Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs2508691	0.82[EUR][1000 genomes]
rs2508696	0.85[EUR][1000 genomes]
rs480781	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs493254	0.82[EUR][1000 genomes]
rs536841	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs541458	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs544458	0.85[AFR][1000 genomes]
rs561646	0.84[EUR][1000 genomes]
rs561655	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs565719	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs587038	0.82[EUR][1000 genomes]
rs602222	0.84[EUR][1000 genomes]
rs604767	0.91[ASN][1000 genomes]
rs606505	0.81[EUR][1000 genomes]
rs609903	0.85[EUR][1000 genomes]
rs631639	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs634719	0.81[AFR][1000 genomes]
rs636355	0.84[EUR][1000 genomes]
rs638509	0.93[ASN][1000 genomes]
rs645299	0.83[EUR][1000 genomes]
rs652165	0.94[ASN][1000 genomes]
rs659863	0.85[EUR][1000 genomes]
rs669813	0.83[EUR][1000 genomes]
rs673751	0.80[EUR][1000 genomes]
rs676733	0.85[EUR][1000 genomes]
rs677869	0.85[EUR][1000 genomes]
rs677909	0.88[EUR][1000 genomes]
rs694011	0.88[EUR][1000 genomes]
rs867611	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85781400-85796000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:85791600-85801200	Weak transcription	Pancreas	Pancrea

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