Variant report

No.	Distal block	Cell Line	Cell type
1	chr11:85779081..85782313-chr11:85782461..85788148,6	MCF-7	breast:
2	chr11:85783105..85786132-chr11:85791700..85793903,3	MCF-7	breast:
3	chr11:85773042..85775318-chr11:85782824..85785081,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000073921	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1214669	0.85[AMR][1000 genomes]
rs12285109	0.81[CEU][hapmap]
rs1445496	0.81[CEU][hapmap]
rs1941375	0.86[YRI][hapmap]
rs3016786	0.80[CEU][hapmap]
rs480781	0.89[ASN][1000 genomes]
rs490507	0.84[YRI][hapmap]
rs535590	0.93[ASN][1000 genomes]
rs536841	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs541458	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs561655	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs565719	0.94[ASN][1000 genomes]
rs604767	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs615887	0.86[YRI][hapmap]
rs621942	0.89[YRI][hapmap]
rs631639	0.82[ASN][1000 genomes]
rs636848	0.87[YRI][hapmap];0.83[AFR][1000 genomes]
rs652165	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs664629	0.93[YRI][hapmap]
rs669336	0.81[YRI][hapmap]
rs681041	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829985	chr11:85740319-85789350	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85781400-85796000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:85781800-85785600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:85782400-85785200	Weak transcription	Placenta	Placenta
4	chr11:85783600-85785000	Weak transcription	HSMM	muscle
5	chr11:85783800-85785000	Weak transcription	K562	blood
6	chr11:85784400-85785800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:85784800-85785400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:85784800-85785600	Enhancers	Primary neutrophils fromperipheralblood	blood

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