Variant report

Variant	rs7129687
Chromosome Location	chr11:85871184-85871185
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85778281..85780069-chr11:85870472..85872120,2	MCF-7	breast:
2	chr11:85861483..85864657-chr11:85868635..85871991,4	K562	blood:
3	chr11:85854757..85856923-chr11:85869692..85871194,2	K562	blood:

Variant related genes	Relation type
ENSG00000200877	Chromatin interaction
ENSG00000073921	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10751134	0.86[JPT][hapmap]
rs10792830	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs10792831	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs10792832	0.91[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs10898438	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs10898439	0.95[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs10898440	0.82[ASN][1000 genomes]
rs1898895	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs2508692	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs2508696	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs3016786	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs3851178	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs3851179	0.91[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs475639	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs484154	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs493254	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs4944560	0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs497816	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs526904	0.96[CHB][hapmap];0.86[JPT][hapmap]
rs532470	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs542126	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs545592	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs561646	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs602222	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs609903	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs613222	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs629343	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs645299	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs659023	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs666682	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs669813	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs676733	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs677909	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs682928	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs683494	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs694011	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs7110631	0.84[ASN][1000 genomes]
rs7113976	0.83[CHB][hapmap]
rs7114331	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs7114401	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs7941541	0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs867611	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs9787874	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	esv2757460	chr11:85869944-85905513	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759846	chr11:85869944-85905513	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85863400-85872600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr11:85863400-85873000	Weak transcription	Lung	lung
3	chr11:85863600-85871200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:85864200-85871600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr11:85864200-85871600	Weak transcription	Brain Angular Gyrus	brain
6	chr11:85864200-85871600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:85864200-85872000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:85864400-85871600	Weak transcription	Brain Anterior Caudate	brain
9	chr11:85865200-85871200	Weak transcription	Duodenum Mucosa	Duodenum
10	chr11:85865200-85872400	Weak transcription	Liver	Liver
11	chr11:85865400-85874400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:85866400-85874200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr11:85866600-85873000	Weak transcription	Gastric	stomach
14	chr11:85867400-85875800	Enhancers	Placenta	Placenta
15	chr11:85867800-85871800	Weak transcription	Adipose Nuclei	Adipose
16	chr11:85867800-85872800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr11:85867800-85873000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr11:85867800-85873000	Weak transcription	Left Ventricle	heart
19	chr11:85867800-85873000	Weak transcription	Right Ventricle	heart
20	chr11:85868000-85871600	Weak transcription	Primary hematopoietic stem cells	blood
21	chr11:85868000-85876200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:85868600-85874600	Enhancers	Fetal Stomach	stomach
23	chr11:85868800-85876600	Enhancers	Hela-S3	cervix
24	chr11:85869000-85874400	Enhancers	NHEK	skin
25	chr11:85869800-85871600	Enhancers	Fetal Thymus	thymus
26	chr11:85869800-85873000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr11:85870000-85872800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr11:85870200-85872000	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr11:85870200-85874400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:85870200-85875800	Enhancers	Brain Hippocampus Middle	brain
31	chr11:85870400-85871200	Enhancers	Brain Cingulate Gyrus	brain
32	chr11:85870400-85872600	Enhancers	Primary B cells from peripheral blood	blood
33	chr11:85870400-85873600	Enhancers	Placenta Amnion	Placenta Amnion
34	chr11:85870400-85874200	Enhancers	K562	blood
35	chr11:85870400-85875200	Enhancers	Fetal Muscle Leg	muscle
36	chr11:85870600-85871600	Enhancers	Fetal Muscle Trunk	muscle
37	chr11:85870600-85871800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr11:85870600-85872200	Enhancers	Stomach Smooth Muscle	stomach
39	chr11:85870600-85873600	Enhancers	GM12878-XiMat	blood
40	chr11:85870600-85873800	Enhancers	Fetal Lung	lung
41	chr11:85870600-85874200	Enhancers	Fetal Intestine Large	intestine
42	chr11:85870600-85874600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr11:85870600-85874800	Enhancers	Ovary	ovary
44	chr11:85870600-85875800	Enhancers	Primary monocytes fromperipheralblood	blood
45	chr11:85870800-85872000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr11:85870800-85872000	Enhancers	Primary B cells from cord blood	blood
47	chr11:85870800-85872800	Enhancers	Monocytes-CD14+_RO01746	blood
48	chr11:85870800-85873000	Weak transcription	Right Atrium	heart
49	chr11:85870800-85873800	Enhancers	HSMM	muscle
50	chr11:85870800-85875000	Enhancers	HMEC	breast

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