Variant report

Variant rs6050473
Chromosome Location chr20:25219993-25219994
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:50 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:25204200-25222800 Weak transcription HUES64 Cell Line embryonic stem cell
2 chr20:25213200-25221800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
3 chr20:25213400-25222200 Enhancers HMEC breast
4 chr20:25213600-25222200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
5 chr20:25213800-25220200 Enhancers Breast Myoepithelial Primary Cells Breast
6 chr20:25214200-25220800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
7 chr20:25214400-25223000 Weak transcription iPS-15b Cell Line embryonic stem cell
8 chr20:25215200-25221800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr20:25215400-25223200 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
10 chr20:25215600-25221600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr20:25215800-25221600 Weak transcription Fetal Kidney kidney
12 chr20:25215800-25222800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
13 chr20:25216000-25220200 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
14 chr20:25216000-25222800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
15 chr20:25216600-25220400 Enhancers Esophagus oesophagus
16 chr20:25217000-25220400 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
17 chr20:25217000-25220600 Enhancers Placenta Amnion Placenta Amnion
18 chr20:25217200-25220800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
19 chr20:25217200-25220800 Enhancers NH-A brain
20 chr20:25217200-25221000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
21 chr20:25217400-25220800 Enhancers K562 blood
22 chr20:25217600-25227600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
23 chr20:25218200-25220000 Enhancers Lung lung
24 chr20:25218600-25220200 Enhancers Sigmoid Colon Sigmoid Colon
25 chr20:25218600-25220400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
26 chr20:25218800-25220800 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
27 chr20:25218800-25221600 Weak transcription HUES6 Cell Line embryonic stem cell
28 chr20:25219000-25220200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
29 chr20:25219000-25221400 Weak transcription ES-I3 Cell Line embryonic stem cell
30 chr20:25219000-25222000 Enhancers HSMM muscle
31 chr20:25219000-25226000 Weak transcription Colonic Mucosa Colon
32 chr20:25219000-25227400 Weak transcription Colon Smooth Muscle Colon
33 chr20:25219200-25220000 Enhancers Hela-S3 cervix
34 chr20:25219200-25220000 Enhancers Osteobl bone
35 chr20:25219200-25220600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
36 chr20:25219200-25221800 Enhancers Muscle Satellite Cultured Cells --
37 chr20:25219400-25221600 Weak transcription Fetal Heart heart
38 chr20:25219400-25221800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
39 chr20:25219400-25222000 Enhancers NHEK skin
40 chr20:25219400-25226800 Weak transcription Rectal Mucosa Donor 29 rectum
41 chr20:25219400-25226800 Weak transcription Right Ventricle heart
42 chr20:25219400-25227600 Weak transcription Brain Inferior Temporal Lobe brain
43 chr20:25219400-25228000 Weak transcription ES-WA7 Cell Line embryonic stem cell
44 chr20:25219600-25220400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
45 chr20:25219600-25220800 Weak transcription Rectal Mucosa Donor 31 rectum
46 chr20:25219600-25222800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
47 chr20:25219600-25227000 Weak transcription NHDF-Ad bronchial
48 chr20:25219800-25220200 Flanking Active TSS A549 lung
49 chr20:25219800-25221600 Weak transcription HSMMtube muscle
50 chr20:25219800-25227400 Weak transcription NHLF lung

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