Variant report
| Variant | rs60601397 |
|---|---|
| Chromosome Location | chr6:75419342-75419343 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs57237564 | 0.97[AFR][1000 genomes] |
| rs57718183 | 1.00[AFR][1000 genomes] |
| rs58722231 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59154435 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60223772 | 0.97[AFR][1000 genomes] |
| rs73455994 | 1.00[AMR][1000 genomes] |
| rs73464042 | 0.92[AFR][1000 genomes] |
| rs73464043 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73464048 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73464051 | 1.00[AFR][1000 genomes] |
| rs73464053 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73464055 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73464057 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73464060 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73464062 | 0.95[AFR][1000 genomes] |
| rs73464066 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73464076 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73464087 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73464089 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73466008 | 0.97[AFR][1000 genomes] |
| rs73466015 | 0.88[AFR][1000 genomes] |
| rs73466035 | 0.97[AFR][1000 genomes] |
| rs73466039 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73466040 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73466043 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv520746 | chr6:75211546-75691814 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv917283 | chr6:75234428-75641440 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv830694 | chr6:75245483-75446282 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv1015675 | chr6:75365189-75422887 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv830695 | chr6:75409656-75583115 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:75415600-75423600 | Weak transcription | Osteobl | bone |
