Variant report

Variant	rs73466040
Chromosome Location	chr6:75429324-75429325
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs57237564	1.00[AFR][1000 genomes]
rs57718183	0.97[AFR][1000 genomes]
rs58722231	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59154435	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60223772	1.00[AFR][1000 genomes]
rs60601397	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73455994	1.00[AMR][1000 genomes]
rs73464042	0.89[AFR][1000 genomes]
rs73464043	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73464048	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73464051	0.97[AFR][1000 genomes]
rs73464053	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73464055	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73464057	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73464060	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73464062	0.92[AFR][1000 genomes]
rs73464066	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73464076	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73464087	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73464089	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73466008	1.00[AFR][1000 genomes]
rs73466015	0.90[AFR][1000 genomes]
rs73466035	1.00[AFR][1000 genomes]
rs73466039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73466043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830694	chr6:75245483-75446282	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv830695	chr6:75409656-75583115	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75424400-75430400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:75426000-75432400	Weak transcription	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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