Variant report

Variant	rs73464053
Chromosome Location	chr6:75417689-75417690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs57237564	0.97[AFR][1000 genomes]
rs57718183	1.00[AFR][1000 genomes]
rs58722231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59154435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60223772	0.97[AFR][1000 genomes]
rs60601397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73455994	1.00[AMR][1000 genomes]
rs73464042	0.92[AFR][1000 genomes]
rs73464043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73464048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73464051	1.00[AFR][1000 genomes]
rs73464055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73464057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73464060	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73464062	0.95[AFR][1000 genomes]
rs73464066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73464076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73464087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73464089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73466008	0.97[AFR][1000 genomes]
rs73466015	0.88[AFR][1000 genomes]
rs73466035	0.97[AFR][1000 genomes]
rs73466039	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73466040	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73466043	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830694	chr6:75245483-75446282	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1027029	chr6:75364848-75417967	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1015675	chr6:75365189-75422887	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv830695	chr6:75409656-75583115	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75415600-75423600	Weak transcription	Osteobl	bone
2	chr6:75416800-75417800	Enhancers	A549	lung
3	chr6:75417600-75417800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links