Variant report

Variant	rs60684121
Chromosome Location	chr4:152660581-152660582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56237971	1.00[AFR][1000 genomes]
rs60259671	0.90[AFR][1000 genomes]
rs73862265	1.00[AFR][1000 genomes]
rs73862266	1.00[AFR][1000 genomes]
rs73865003	1.00[AFR][1000 genomes]
rs73865010	1.00[AFR][1000 genomes]
rs73865013	1.00[AFR][1000 genomes]
rs73865015	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508322	chr4:152617079-152678951	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152616600-152665400	Weak transcription	NHDF-Ad	bronchial
2	chr4:152629200-152681400	Weak transcription	Colonic Mucosa	Colon
3	chr4:152629400-152681200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:152644600-152666600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr4:152651800-152665000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr4:152651800-152665200	Weak transcription	HSMM	muscle
7	chr4:152651800-152667200	Weak transcription	Gastric	stomach
8	chr4:152651800-152681400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr4:152652000-152665000	Weak transcription	K562	blood
10	chr4:152656800-152661000	Weak transcription	Fetal Intestine Large	intestine
11	chr4:152657000-152663600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:152657600-152661400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr4:152657800-152664200	Weak transcription	NHEK	skin
14	chr4:152657800-152665800	Weak transcription	Ovary	ovary
15	chr4:152657800-152674000	Weak transcription	Brain Hippocampus Middle	brain
16	chr4:152657800-152677600	Weak transcription	Brain Anterior Caudate	brain
17	chr4:152658000-152666600	Weak transcription	Brain Cingulate Gyrus	brain
18	chr4:152658200-152667200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr4:152658400-152674200	Weak transcription	Fetal Muscle Trunk	muscle
20	chr4:152658600-152665000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr4:152658600-152674000	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr4:152658600-152681200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr4:152658800-152660800	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr4:152658800-152661600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr4:152658800-152664400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr4:152659000-152661000	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr4:152659000-152661000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr4:152659000-152661000	Enhancers	Psoas Muscle	Psoas
29	chr4:152659000-152674000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr4:152659000-152681400	Weak transcription	Pancreas	Pancrea
31	chr4:152659200-152665800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr4:152659200-152673800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr4:152659200-152674200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr4:152659200-152674400	Weak transcription	Right Ventricle	heart
35	chr4:152659400-152660600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr4:152659400-152661000	Weak transcription	Liver	Liver
37	chr4:152659400-152662400	Enhancers	Fetal Heart	heart
38	chr4:152659400-152664200	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr4:152659400-152665800	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr4:152659400-152665800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr4:152659400-152668200	Weak transcription	HepG2	liver
42	chr4:152659400-152674000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr4:152659400-152674200	Weak transcription	Duodenum Mucosa	Duodenum
44	chr4:152659400-152674600	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr4:152659400-152675200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr4:152659400-152675400	Weak transcription	Colon Smooth Muscle	Colon
47	chr4:152659400-152677200	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr4:152659400-152678400	Weak transcription	Fetal Stomach	stomach
49	chr4:152659400-152681400	Weak transcription	Thymus	Thymus
50	chr4:152659600-152660600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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