Variant report

Variant	rs73865003
Chromosome Location	chr4:152624967-152624968
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56237971	1.00[AFR][1000 genomes]
rs60259671	0.90[AFR][1000 genomes]
rs60684121	1.00[AFR][1000 genomes]
rs73862265	1.00[AFR][1000 genomes]
rs73862266	1.00[AFR][1000 genomes]
rs73865010	1.00[AFR][1000 genomes]
rs73865013	1.00[AFR][1000 genomes]
rs73865015	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4551	chr4:152582617-152627367	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv508322	chr4:152617079-152678951	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152563800-152625200	Weak transcription	Hela-S3	cervix
2	chr4:152585600-152628600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:152585800-152640400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr4:152591200-152646800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr4:152592600-152636400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr4:152596400-152627800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr4:152596400-152628600	Weak transcription	Colonic Mucosa	Colon
8	chr4:152596400-152640600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr4:152598400-152648200	Weak transcription	HMEC	breast
10	chr4:152599000-152637200	Weak transcription	GM12878-XiMat	blood
11	chr4:152600600-152626200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr4:152605400-152628600	Weak transcription	Aorta	Aorta
13	chr4:152609200-152640200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr4:152609600-152628800	Weak transcription	HepG2	liver
15	chr4:152609600-152640400	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr4:152609800-152646200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr4:152611800-152640000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr4:152612000-152651000	Weak transcription	K562	blood
19	chr4:152612200-152628800	Weak transcription	Colon Smooth Muscle	Colon
20	chr4:152612200-152632600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:152612400-152631800	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr4:152612400-152642600	Weak transcription	NHLF	lung
23	chr4:152612600-152630000	Weak transcription	NH-A	brain
24	chr4:152612800-152628600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr4:152613000-152627000	Weak transcription	Brain Germinal Matrix	brain
26	chr4:152613000-152629000	Weak transcription	Osteobl	bone
27	chr4:152614000-152626200	Weak transcription	Fetal Thymus	thymus
28	chr4:152614400-152640200	Weak transcription	Gastric	stomach
29	chr4:152614600-152651200	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr4:152615000-152651000	Weak transcription	HSMM	muscle
31	chr4:152616600-152629200	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr4:152616600-152665400	Weak transcription	NHDF-Ad	bronchial
33	chr4:152617200-152629800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr4:152617600-152629400	Weak transcription	Fetal Heart	heart
35	chr4:152617600-152631400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr4:152618200-152625600	Strong transcription	Primary B cells from cord blood	blood
37	chr4:152618600-152629800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr4:152618600-152630400	Weak transcription	Fetal Brain Female	brain
39	chr4:152619000-152627400	Strong transcription	Fetal Muscle Leg	muscle
40	chr4:152619000-152638400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr4:152620000-152626000	Weak transcription	Brain Cingulate Gyrus	brain
42	chr4:152620400-152632400	Weak transcription	Psoas Muscle	Psoas
43	chr4:152620600-152625200	Strong transcription	Stomach Smooth Muscle	stomach
44	chr4:152620600-152629200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr4:152620600-152629400	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr4:152620600-152631000	Strong transcription	Liver	Liver
47	chr4:152620600-152641200	Strong transcription	Primary T cells from cord blood	blood
48	chr4:152620800-152625000	Strong transcription	Primary hematopoietic stem cells	blood
49	chr4:152620800-152625200	Strong transcription	Brain Inferior Temporal Lobe	brain
50	chr4:152620800-152627800	Strong transcription	Fetal Intestine Large	intestine

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