Variant report

Variant	rs73862266
Chromosome Location	chr4:152733861-152733862
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56237971	1.00[AFR][1000 genomes]
rs60259671	0.90[AFR][1000 genomes]
rs60684121	1.00[AFR][1000 genomes]
rs73862265	1.00[AFR][1000 genomes]
rs73865003	1.00[AFR][1000 genomes]
rs73865010	1.00[AFR][1000 genomes]
rs73865013	1.00[AFR][1000 genomes]
rs73865015	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152729600-152739400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:152731200-152734000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr4:152731600-152734000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:152732000-152734000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr4:152732600-152735000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:152733200-152734000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:152733400-152734000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr4:152733600-152734000	Enhancers	H9 Cell Line	embryonic stem cell
9	chr4:152733800-152734000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr4:152733800-152735000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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