Variant report

Variant	rs60736051
Chromosome Location	chr1:220309265-220309266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1039206	0.85[AFR][1000 genomes]
rs1124763	0.85[AFR][1000 genomes]
rs11805285	0.91[EUR][1000 genomes]
rs17007135	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17007139	0.85[AFR][1000 genomes]
rs2577152	0.85[ASN][1000 genomes]
rs3754060	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3820455	0.85[AFR][1000 genomes]
rs58256586	0.82[AFR][1000 genomes]
rs58966246	0.87[AFR][1000 genomes]
rs59914129	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59991104	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61018457	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61569366	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73096557	0.86[ASN][1000 genomes]
rs73096595	0.85[AFR][1000 genomes]
rs73096599	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73098512	0.85[AFR][1000 genomes]
rs73098515	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73098518	0.85[AFR][1000 genomes]
rs73098527	0.87[AFR][1000 genomes]
rs73098528	0.87[AFR][1000 genomes]
rs73098530	0.87[AFR][1000 genomes]
rs73098537	0.85[AFR][1000 genomes]
rs73098558	0.91[EUR][1000 genomes]
rs73098583	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427930	chr1:220120379-220333434	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	744 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220268400-220330200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:220269400-220330000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr1:220278600-220316200	Weak transcription	Pancreas	Pancrea
4	chr1:220281400-220314400	Weak transcription	Fetal Brain Male	brain
5	chr1:220284600-220313000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr1:220284600-220313600	Weak transcription	Gastric	stomach
7	chr1:220284600-220324600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr1:220288200-220324600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr1:220288400-220310200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr1:220291200-220314400	Weak transcription	NH-A	brain
11	chr1:220295400-220310600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr1:220296000-220327600	Weak transcription	Colonic Mucosa	Colon
13	chr1:220296600-220323200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:220298600-220321600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr1:220298800-220310400	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr1:220298800-220311600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr1:220298800-220334600	Strong transcription	Fetal Thymus	thymus
18	chr1:220299000-220321200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr1:220299000-220322800	Weak transcription	Stomach Mucosa	stomach
20	chr1:220300000-220310000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr1:220300000-220321000	Strong transcription	Fetal Intestine Large	intestine
22	chr1:220300000-220321600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr1:220301000-220310200	Weak transcription	HUVEC	blood vessel
24	chr1:220301000-220314600	Weak transcription	Right Ventricle	heart
25	chr1:220301200-220310600	Weak transcription	Hela-S3	cervix
26	chr1:220301400-220312600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr1:220302000-220309800	Weak transcription	Esophagus	oesophagus
28	chr1:220302000-220313000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr1:220302400-220312600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr1:220303200-220310600	Weak transcription	Brain Germinal Matrix	brain
31	chr1:220303200-220312200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr1:220303200-220314600	Weak transcription	NHLF	lung
33	chr1:220303600-220310200	Weak transcription	A549	lung
34	chr1:220303800-220310400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr1:220303800-220331600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr1:220304600-220316400	Strong transcription	Fetal Stomach	stomach
37	chr1:220304800-220335600	Strong transcription	Placenta	Placenta
38	chr1:220305400-220310200	Strong transcription	Duodenum Mucosa	Duodenum
39	chr1:220305400-220315800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr1:220305400-220321600	Strong transcription	Primary B cells from peripheral blood	blood
41	chr1:220305400-220331800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr1:220305400-220347000	Strong transcription	Dnd41	blood
43	chr1:220305400-220376600	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr1:220305600-220316400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr1:220305600-220347600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr1:220305800-220310000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr1:220305800-220311400	Strong transcription	Ovary	ovary
48	chr1:220305800-220321600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr1:220305800-220347000	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr1:220306000-220311800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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