Variant report

Variant	rs60755658
Chromosome Location	chr6:164113946-164113947
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:164108307..164110350-chr6:164112342..164114200,2	K562	blood:
2	chr6:164094751..164097351-chr6:164112738..164115220,2	K562	blood:
3	chr6:164104118..164105951-chr6:164112390..164114240,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs56984848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57235208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57308664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57456277	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57524107	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57770616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58214854	0.91[AFR][1000 genomes]
rs59039271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73236460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73236470	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241724	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241742	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241743	1.00[AFR][1000 genomes]
rs73241745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241748	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241750	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241755	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv2758092	chr6:163992064-164161903	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv2759490	chr6:163992064-164161903	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1019107	chr6:164056423-164144164	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164109000-164116600	Weak transcription	Pancreas	Pancrea
2	chr6:164111400-164116800	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links