Variant report

Variant	rs73241743
Chromosome Location	chr6:164116694-164116695
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:164115301..164117140-chr6:164125243..164127219,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs56984848	1.00[AFR][1000 genomes]
rs57235208	1.00[AFR][1000 genomes]
rs57308664	1.00[AFR][1000 genomes]
rs57456277	0.91[AFR][1000 genomes]
rs57524107	0.91[AFR][1000 genomes]
rs57770616	1.00[AFR][1000 genomes]
rs58214854	0.91[AFR][1000 genomes]
rs59039271	1.00[AFR][1000 genomes]
rs60755658	1.00[AFR][1000 genomes]
rs73236460	1.00[AFR][1000 genomes]
rs73236470	0.84[AFR][1000 genomes]
rs73241724	0.91[AFR][1000 genomes]
rs73241725	1.00[AFR][1000 genomes]
rs73241734	1.00[AFR][1000 genomes]
rs73241736	1.00[AFR][1000 genomes]
rs73241742	0.91[AFR][1000 genomes]
rs73241745	1.00[AFR][1000 genomes]
rs73241748	0.91[AFR][1000 genomes]
rs73241750	0.91[AFR][1000 genomes]
rs73241752	1.00[AFR][1000 genomes]
rs73241755	0.91[AFR][1000 genomes]
rs73241765	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv2758092	chr6:163992064-164161903	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv2759490	chr6:163992064-164161903	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1019107	chr6:164056423-164144164	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1025171	chr6:164113981-164170027	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164111400-164116800	Weak transcription	Ovary	ovary
2	chr6:164116000-164117000	Enhancers	Liver	Liver
3	chr6:164116000-164119800	Enhancers	GM12878-XiMat	blood
4	chr6:164116200-164116800	Bivalent Enhancer	HepG2	liver
5	chr6:164116400-164117800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:164116400-164119000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:164116600-164117000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:164116600-164117200	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:164116600-164117400	Enhancers	Gastric	stomach
10	chr6:164116600-164117600	Enhancers	Pancreas	Pancrea
11	chr6:164116600-164120000	Enhancers	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links