Variant report

Variant	rs73241725
Chromosome Location	chr6:164106635-164106636
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs56984848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57235208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57308664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57456277	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57524107	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57770616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58214854	0.91[AFR][1000 genomes]
rs59039271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60755658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73236460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73236470	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241724	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241742	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241743	1.00[AFR][1000 genomes]
rs73241745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241748	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241750	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241755	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv2758092	chr6:163992064-164161903	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv2759490	chr6:163992064-164161903	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1019107	chr6:164056423-164144164	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164102600-164110200	Weak transcription	Fetal Heart	heart
2	chr6:164105600-164107000	Enhancers	Primary B cells from peripheral blood	blood
3	chr6:164106400-164106800	Enhancers	GM12878-XiMat	blood
4	chr6:164106600-164106800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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