Variant report

Variant	rs60800529
Chromosome Location	chr5:92419331-92419332
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56041319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59985108	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60523492	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772045	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772046	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772052	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv830399	chr5:92290915-92462490	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92415000-92419800	Weak transcription	Fetal Kidney	kidney
2	chr5:92415800-92428000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr5:92419000-92424400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:92419000-92428000	Weak transcription	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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