The 2.0 version of rSNPBase

Variant report

Variant rs60853907
Chromosome Location chr5:100228413-100228414
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:100200200-100234400 Weak transcription Fetal Brain Male brain
2 chr5:100208000-100235800 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr5:100219000-100233400 Weak transcription Brain Germinal Matrix brain
4 chr5:100222200-100229600 Weak transcription Primary T cells fromperipheralblood blood
5 chr5:100223200-100229600 Weak transcription Fetal Thymus thymus
6 chr5:100225000-100231600 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
7 chr5:100225200-100233800 Weak transcription Thymus Thymus
8 chr5:100226400-100229000 Weak transcription HUVEC blood vessel
9 chr5:100226400-100229200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
10 chr5:100226400-100233800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
11 chr5:100226400-100235600 Weak transcription Placenta Placenta
12 chr5:100226800-100233800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
13 chr5:100227000-100234400 Weak transcription Right Atrium heart
14 chr5:100227000-100235600 Weak transcription Muscle Satellite Cultured Cells --
15 chr5:100227200-100231600 Weak transcription Primary T killer memory cells from peripheral blood blood
16 chr5:100227200-100232800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
17 chr5:100227200-100232800 Weak transcription Osteobl bone
18 chr5:100227200-100235600 Weak transcription Fetal Lung lung
19 chr5:100227400-100229000 Weak transcription Primary neutrophils fromperipheralblood blood
20 chr5:100227400-100229400 Weak transcription Primary B cells from cord blood blood
21 chr5:100227400-100229400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
22 chr5:100227400-100229600 Weak transcription Primary hematopoietic stem cells short term culture blood
23 chr5:100227400-100230200 Weak transcription Primary hematopoietic stem cells blood
24 chr5:100227400-100230400 Weak transcription Primary T helper naive cells from peripheral blood blood
25 chr5:100227600-100228600 Transcr. at gene 5' and 3' Dnd41 blood
26 chr5:100227600-100230000 Weak transcription Primary T helper naive cells fromperipheralblood blood
27 chr5:100227600-100231800 Strong transcription Primary monocytes fromperipheralblood blood
28 chr5:100227800-100228600 Genic enhancers Primary T helper memory cells from peripheral blood 1 blood
29 chr5:100227800-100229200 Weak transcription Primary T regulatory cells fromperipheralblood blood
30 chr5:100227800-100230000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
31 chr5:100228000-100229200 Weak transcription Primary T helper cells PMA-I stimulated --
32 chr5:100228000-100229400 Weak transcription Primary T helper cells fromperipheralblood blood
33 chr5:100228000-100231200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
34 chr5:100228000-100231400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
35 chr5:100228000-100231600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
36 chr5:100228000-100232600 Strong transcription Primary B cells from peripheral blood blood
37 chr5:100228200-100228600 Weak transcription Monocytes-CD14+_RO01746 blood
38 chr5:100228200-100229000 Weak transcription Primary T cells from cord blood blood
39 chr5:100228200-100229200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
40 chr5:100228200-100231200 Weak transcription Primary T killer naive cells fromperipheralblood blood
41 chr5:100228400-100229600 Strong transcription GM12878-XiMat blood

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Last update: Aug 31, 2015