The 2.0 version of rSNPBase

Variant report

Variant rs72778635
Chromosome Location chr5:100235221-100235222
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:100208000-100235800 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr5:100226400-100235600 Weak transcription Placenta Placenta
3 chr5:100227000-100235600 Weak transcription Muscle Satellite Cultured Cells --
4 chr5:100227200-100235600 Weak transcription Fetal Lung lung
5 chr5:100229200-100235400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
6 chr5:100230800-100236400 Transcr. at gene 5' and 3' Dnd41 blood
7 chr5:100231000-100235400 Enhancers Primary T helper naive cells from peripheral blood blood
8 chr5:100231000-100235400 Weak transcription HUVEC blood vessel
9 chr5:100231200-100235400 Enhancers Primary T helper memory cells from peripheral blood 1 blood
10 chr5:100231200-100235600 Enhancers Primary T killer naive cells fromperipheralblood blood
11 chr5:100232000-100235600 Enhancers Primary neutrophils fromperipheralblood blood
12 chr5:100232200-100235400 Weak transcription Fetal Thymus thymus
13 chr5:100232400-100235600 Enhancers Primary T helper cells fromperipheralblood blood
14 chr5:100232600-100245600 Active TSS GM12878-XiMat blood
15 chr5:100233000-100235400 Weak transcription Fetal Brain Female brain
16 chr5:100233000-100235600 Enhancers Primary T helper naive cells fromperipheralblood blood
17 chr5:100233000-100235600 Weak transcription NHDF-Ad bronchial
18 chr5:100233600-100235600 Enhancers Adipose Nuclei Adipose
19 chr5:100233800-100235400 Enhancers Primary hematopoietic stem cells short term culture blood
20 chr5:100233800-100235600 Enhancers Primary T killer memory cells from peripheral blood blood
21 chr5:100234000-100235400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
22 chr5:100234000-100236200 Flanking Active TSS Primary T helper cells PMA-I stimulated --
23 chr5:100234200-100235400 Genic enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr5:100234200-100235400 Weak transcription Duodenum Mucosa Duodenum
25 chr5:100234200-100235600 Genic enhancers Primary B cells from peripheral blood blood
26 chr5:100234200-100235600 Weak transcription Fetal Muscle Leg muscle
27 chr5:100234400-100236400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
28 chr5:100234600-100235400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
29 chr5:100234600-100235400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
30 chr5:100234600-100235600 Weak transcription Primary T cells fromperipheralblood blood
31 chr5:100234600-100235600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
32 chr5:100234600-100235600 Weak transcription Thymus Thymus
33 chr5:100234600-100235600 Weak transcription HSMM muscle
34 chr5:100234600-100235800 Weak transcription Right Atrium heart
35 chr5:100234600-100235800 Weak transcription Spleen Spleen
36 chr5:100234600-100236000 Weak transcription Small Intestine intestine
37 chr5:100234800-100235400 Enhancers Brain Germinal Matrix brain
38 chr5:100234800-100235600 Enhancers Primary monocytes fromperipheralblood blood
39 chr5:100235000-100235400 Weak transcription Fetal Brain Male brain
40 chr5:100235000-100235400 Weak transcription Osteobl bone
41 chr5:100235000-100235800 Transcr. at gene 5' and 3' hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
42 chr5:100235000-100235800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
43 chr5:100235000-100235800 Weak transcription Pancreatic Islets Pancreatic Islet
44 chr5:100235000-100236000 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
45 chr5:100235000-100236400 Flanking Active TSS Primary hematopoietic stem cells blood
46 chr5:100235000-100236400 Flanking Active TSS Monocytes-CD14+_RO01746 blood
47 chr5:100235200-100235400 Weak transcription A549 lung
48 chr5:100235200-100235600 Active TSS Primary T helper 17 cells PMA-I stimulated --
49 chr5:100235200-100235600 Active TSS Primary T regulatory cells fromperipheralblood blood
50 chr5:100235200-100235600 Enhancers Primary mononuclear cells fromperipheralblood Blood

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Last update: Aug 31, 2015