Variant report

Variant	rs3756355
Chromosome Location	chr5:100240001-100240002
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:100235429-100240649	GM15510	blood:	n/a	n/a
2	POLR2A	chr5:100235280-100240729	GM12878	blood:	n/a	n/a
3	POLR2A	chr5:100235332-100240774	GM12892	blood:	n/a	n/a
4	CHD2	chr5:100239910-100240592	GM12878	blood:	n/a	n/a
5	CREB1	chr5:100238710-100240519	GM12878	blood:	n/a	n/a
6	NFYB	chr5:100239836-100240205	GM12878	blood:	n/a	n/a
7	RCOR1	chr5:100239926-100240151	K562	blood:	n/a	n/a
8	YY1	chr5:100239861-100240338	GM12892	blood:	n/a	n/a
9	WRNIP1	chr5:100235346-100240713	GM12878	blood:	n/a	n/a
10	MTA3	chr5:100235381-100240793	GM12878	blood:	n/a	n/a
11	BCLAF1	chr5:100239835-100240634	GM12878	blood:	n/a	chr5:100240273-100240282
12	BHLHE40	chr5:100238806-100240722	GM12878	blood:	n/a	n/a
13	POLR2A	chr5:100239834-100240235	GM12878	blood:	n/a	n/a
14	POU2F2	chr5:100239867-100240375	GM12891	blood:	n/a	n/a
15	PML	chr5:100239866-100240510	GM12878	blood:	n/a	chr5:100240171-100240179
16	POLR2A	chr5:100235518-100240611	Raji	blood:	n/a	n/a
17	IKZF1	chr5:100239658-100240544	GM12878	blood:	n/a	n/a
18	POLR2A	chr5:100233971-100241412	GM18505	blood:	n/a	n/a
19	ELF1	chr5:100239951-100240236	GM12878	blood:	n/a	n/a
20	EBF1	chr5:100239866-100240221	GM12878	blood:	n/a	n/a
21	POLR2A	chr5:100232586-100241372	GM12891	blood:	n/a	n/a
22	RFX5	chr5:100238816-100240446	GM12878	blood:	n/a	chr5:100239027-100239036
23	POLR2A	chr5:100238674-100240337	GM10847	blood:	n/a	n/a
24	FOXM1	chr5:100238731-100240627	GM12878	blood:	n/a	chr5:100239487-100239495 chr5:100240588-100240596
25	POLR2A	chr5:100235044-100240661	GM12892	blood:	n/a	n/a
26	STAT1	chr5:100239709-100240349	GM12878	blood:	n/a	n/a
27	SIN3A	chr5:100237053-100240427	GM12878	blood:	n/a	n/a
28	RELA	chr5:100237275-100240608	GM18505	blood:	n/a	n/a
29	CHD1	chr5:100234019-100241405	GM12878	blood:	n/a	n/a
30	MEF2C	chr5:100239895-100240602	GM12878	blood:	n/a	chr5:100240318-100240329 chr5:100240311-100240332 chr5:100240462-100240479 chr5:100240462-100240477 chr5:100240311-100240332 chr5:100240316-100240330
31	RUNX3	chr5:100238723-100240689	GM12878	blood:	n/a	n/a
32	POLR2A	chr5:100235363-100241328	GM12878	blood:	n/a	n/a
33	POLR2A	chr5:100235760-100240525	GM12878	blood:	n/a	n/a
34	POU2F2	chr5:100239867-100240577	GM12878	blood:	n/a	n/a
35	POLR2A	chr5:100235479-100241390	GM18526	blood:	n/a	n/a
36	PML	chr5:100235583-100240737	GM12878	blood:	n/a	chr5:100240171-100240179
37	ZNF263	chr5:100235865-100240291	HEK293-T-REx	kidney:	n/a	n/a
38	POLR2A	chr5:100239958-100240315	HL-60	blood:	n/a	n/a
39	EBF1	chr5:100237565-100240618	GM12878	blood:	n/a	chr5:100239208-100239219
40	RELA	chr5:100235704-100241391	GM12878	blood:	n/a	n/a
41	PBX3	chr5:100239921-100240143	GM12878	blood:	n/a	n/a
42	TAF1	chr5:100239846-100240602	GM12878	blood:	n/a	n/a
43	SP1	chr5:100239860-100240225	GM12878	blood:	n/a	n/a
44	MEF2A	chr5:100239756-100240560	GM12878	blood:	n/a	chr5:100240318-100240329 chr5:100240311-100240332 chr5:100240462-100240479 chr5:100239872-100239883 chr5:100240462-100240477 chr5:100240311-100240332 chr5:100240316-100240330 chr5:100239868-100239885
45	TBP	chr5:100237362-100240593	GM12878	blood:	n/a	n/a
46	POLR2A	chr5:100239876-100240327	GM12878	blood:	n/a	n/a
47	MTA3	chr5:100235718-100240515	GM12878	blood:	n/a	n/a
48	MXI1	chr5:100234124-100240505	GM12878	blood:	n/a	chr5:100236093-100236102
49	POLR2A	chr5:100235638-100240534	NB4	blood:	n/a	n/a
50	BCLAF1	chr5:100239951-100240633	GM12878	blood:	n/a	chr5:100240273-100240282

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:100235471..100237177-chr5:100239022..100241293,2	MCF-7	breast:

Variant related genes	Relation type
ST8SIA4	TF binding region

Extended variants
information (count: 126 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10043056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10044903	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10052474	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10057237	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10058901	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10059470	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10059846	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10069305	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10075853	0.88[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10078251	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10078934	0.96[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10214216	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10463771	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10463772	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10477661	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10478598	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10478599	0.88[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10478633	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10478649	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10515303	0.90[EUR][1000 genomes]
rs11241752	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11241755	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11241794	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11584	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs11738152	0.96[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11741369	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11742480	0.96[CEU][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11742504	0.96[CEU][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11748306	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12153670	0.96[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12332145	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12332642	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12719316	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13355889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13357545	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13358325	0.96[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13436424	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13857	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1423380	1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1423384	0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1423385	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1428439	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1541676	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1559058	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1559059	0.96[CEU][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17723545	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17724185	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17725452	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17725678	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17726346	0.89[EUR][1000 genomes]
rs17780091	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17780273	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17780471	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17780525	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17782041	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17782250	0.85[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1820150	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1833862	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2059845	0.96[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2059846	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2400313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2544913	0.89[ASN][1000 genomes]
rs2548256	0.87[ASN][1000 genomes]
rs2548257	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2548263	0.89[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2548276	1.00[CHB][hapmap];0.84[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2548278	1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2548279	0.89[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2548280	0.87[ASN][1000 genomes]
rs2725116	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2725124	0.93[CHB][hapmap];0.87[ASN][1000 genomes]
rs28413976	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34564041	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3756350	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3756351	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3756352	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3756353	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3756354	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3776155	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3776167	0.92[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3776168	0.88[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3776170	1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3776171	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3776174	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3776176	0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3822366	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3843478	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3846627	0.96[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3857365	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3909452	0.80[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3909453	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4702991	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4703126	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4703127	0.96[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4703128	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4703130	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4703131	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55805984	0.89[EUR][1000 genomes]
rs55849330	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55861847	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55959219	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55968003	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56752243	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59030588	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59490571	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60663279	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60853907	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs726971	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72776700	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72778607	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72778613	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72778620	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72778635	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72778649	0.89[EUR][1000 genomes]
rs72778650	0.88[EUR][1000 genomes]
rs7447673	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7703643	1.00[CHB][hapmap];0.87[JPT][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7737721	1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9327319	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9327323	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9327327	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs966257	0.96[CEU][hapmap];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023765	chr5:99915011-100733755	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	esv1834675	chr5:100143084-100535029	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv882471	chr5:100234439-100362071	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv882472	chr5:100234439-100512338	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3756355	ST8SIA4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:100232600-100245600	Active TSS	GM12878-XiMat	blood
2	chr5:100235400-100241400	Active TSS	Duodenum Mucosa	Duodenum
3	chr5:100235600-100240400	Active TSS	Brain Angular Gyrus	brain
4	chr5:100235600-100240600	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
5	chr5:100235600-100240600	Active TSS	Thymus	Thymus
6	chr5:100235800-100240400	Active TSS	Brain Anterior Caudate	brain
7	chr5:100235800-100240400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr5:100235800-100240400	Active TSS	Lung	lung
9	chr5:100235800-100240600	Bivalent/Poised TSS	Fetal Intestine Small	intestine
10	chr5:100235800-100240600	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr5:100235800-100241000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:100235800-100241400	Active TSS	Right Atrium	heart
13	chr5:100236000-100240400	Active TSS	Colonic Mucosa	Colon
14	chr5:100236000-100240400	Bivalent/Poised TSS	Fetal Intestine Large	intestine
15	chr5:100236000-100240400	Active TSS	Small Intestine	intestine
16	chr5:100236000-100240600	Active TSS	Right Ventricle	heart
17	chr5:100236000-100240600	Active TSS	Sigmoid Colon	Sigmoid Colon
18	chr5:100236000-100240800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
19	chr5:100236200-100240800	Active TSS	Primary T helper naive cells from peripheral blood	blood
20	chr5:100236200-100241200	Active TSS	Liver	Liver
21	chr5:100236200-100241400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
22	chr5:100236600-100240800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
23	chr5:100237000-100240400	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
24	chr5:100237200-100240200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr5:100237200-100240400	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr5:100237200-100240400	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
27	chr5:100237200-100241000	Active TSS	Left Ventricle	heart
28	chr5:100237200-100241400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr5:100237400-100240200	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr5:100237400-100240400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
31	chr5:100237400-100240400	Bivalent/Poised TSS	Fetal Kidney	kidney
32	chr5:100237400-100240800	Active TSS	Psoas Muscle	Psoas
33	chr5:100237600-100240600	Active TSS	Primary T helper cells PMA-I stimulated	--
34	chr5:100237600-100241200	Active TSS	Dnd41	blood
35	chr5:100237800-100240400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
36	chr5:100237800-100240600	Active TSS	Brain Inferior Temporal Lobe	brain
37	chr5:100238000-100240400	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr5:100238200-100241800	Active TSS	K562	blood
39	chr5:100238400-100240800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
40	chr5:100238600-100240400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
41	chr5:100238600-100240600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
42	chr5:100238600-100240800	Active TSS	Brain Cingulate Gyrus	brain
43	chr5:100238800-100240200	Active TSS	Brain Substantia Nigra	brain
44	chr5:100238800-100240400	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
45	chr5:100238800-100240600	Bivalent/Poised TSS	Fetal Stomach	stomach
46	chr5:100238800-100241600	Active TSS	Rectal Mucosa Donor 29	rectum
47	chr5:100239000-100240200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr5:100239200-100240200	Weak transcription	Aorta	Aorta
49	chr5:100239200-100240200	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
50	chr5:100239200-100240600	Flanking Active TSS	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links