Variant report

Variant	rs72778650
Chromosome Location	chr5:100283037-100283038
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10043056	0.88[EUR][1000 genomes]
rs10044903	0.84[EUR][1000 genomes]
rs10052474	0.84[EUR][1000 genomes]
rs10057237	0.85[EUR][1000 genomes]
rs10059470	0.80[EUR][1000 genomes]
rs10059846	0.88[EUR][1000 genomes]
rs10069305	0.86[EUR][1000 genomes]
rs10075853	0.85[EUR][1000 genomes]
rs10078251	0.84[EUR][1000 genomes]
rs10078934	0.85[EUR][1000 genomes]
rs10463771	0.85[EUR][1000 genomes]
rs10463772	0.85[EUR][1000 genomes]
rs10477661	0.85[EUR][1000 genomes]
rs10478598	0.85[EUR][1000 genomes]
rs10478599	0.85[EUR][1000 genomes]
rs10478633	0.89[EUR][1000 genomes]
rs10478649	0.85[EUR][1000 genomes]
rs10515303	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11241752	0.90[EUR][1000 genomes]
rs11241755	0.90[EUR][1000 genomes]
rs11241794	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11738152	0.85[EUR][1000 genomes]
rs11741369	0.85[EUR][1000 genomes]
rs11742480	0.85[EUR][1000 genomes]
rs11742504	0.85[EUR][1000 genomes]
rs11748306	0.84[EUR][1000 genomes]
rs12055140	0.81[ASN][1000 genomes]
rs12153670	0.85[EUR][1000 genomes]
rs12332145	0.85[EUR][1000 genomes]
rs12332642	0.85[EUR][1000 genomes]
rs12719316	0.86[EUR][1000 genomes]
rs13355889	0.88[EUR][1000 genomes]
rs13357545	0.85[EUR][1000 genomes]
rs13358325	0.85[EUR][1000 genomes]
rs13436424	0.85[EUR][1000 genomes]
rs1345829	0.84[ASN][1000 genomes]
rs13857	0.85[EUR][1000 genomes]
rs1423384	0.84[EUR][1000 genomes]
rs1423385	0.84[EUR][1000 genomes]
rs1541676	0.89[EUR][1000 genomes]
rs1559058	0.85[EUR][1000 genomes]
rs1559059	0.85[EUR][1000 genomes]
rs17723545	0.85[EUR][1000 genomes]
rs17724185	0.86[EUR][1000 genomes]
rs17725452	0.90[EUR][1000 genomes]
rs17725678	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17726244	0.83[EUR][1000 genomes]
rs17726346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17780091	0.87[EUR][1000 genomes]
rs17780273	0.87[EUR][1000 genomes]
rs17780471	0.87[EUR][1000 genomes]
rs17780525	0.85[EUR][1000 genomes]
rs17782041	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1833862	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2059845	0.88[EUR][1000 genomes]
rs2059846	0.81[EUR][1000 genomes]
rs2216614	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2400308	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2400313	0.88[EUR][1000 genomes]
rs2548257	0.80[EUR][1000 genomes]
rs2548279	0.81[EUR][1000 genomes]
rs28413976	0.84[EUR][1000 genomes]
rs34564041	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3756350	0.86[EUR][1000 genomes]
rs3756352	0.89[EUR][1000 genomes]
rs3756353	0.89[EUR][1000 genomes]
rs3756354	0.89[EUR][1000 genomes]
rs3756355	0.88[EUR][1000 genomes]
rs3776155	0.85[EUR][1000 genomes]
rs3776167	0.86[EUR][1000 genomes]
rs3776168	0.82[EUR][1000 genomes]
rs3776174	0.89[EUR][1000 genomes]
rs3822366	0.86[EUR][1000 genomes]
rs3843478	0.85[EUR][1000 genomes]
rs3846627	0.88[EUR][1000 genomes]
rs3857365	0.88[EUR][1000 genomes]
rs3909452	0.82[EUR][1000 genomes]
rs3909453	0.85[EUR][1000 genomes]
rs4702991	0.84[EUR][1000 genomes]
rs4703126	0.87[EUR][1000 genomes]
rs4703127	0.85[EUR][1000 genomes]
rs4703128	0.83[EUR][1000 genomes]
rs4703130	0.84[EUR][1000 genomes]
rs4703131	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4703133	0.82[EUR][1000 genomes]
rs55805984	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55849330	0.86[EUR][1000 genomes]
rs55861847	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55959219	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55968003	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56752243	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59490571	0.89[EUR][1000 genomes]
rs60663279	0.88[EUR][1000 genomes]
rs726971	0.87[EUR][1000 genomes]
rs72776700	0.86[EUR][1000 genomes]
rs72778607	0.86[EUR][1000 genomes]
rs72778613	0.87[EUR][1000 genomes]
rs72778620	0.87[EUR][1000 genomes]
rs72778635	0.89[EUR][1000 genomes]
rs72778649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7446893	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7447673	0.85[EUR][1000 genomes]
rs9327319	0.85[EUR][1000 genomes]
rs9327323	0.85[EUR][1000 genomes]
rs9327327	0.85[EUR][1000 genomes]
rs966257	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023765	chr5:99915011-100733755	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	esv1834675	chr5:100143084-100535029	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv882471	chr5:100234439-100362071	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv882472	chr5:100234439-100512338	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv462320	chr5:100247554-100775607	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv599176	chr5:100247554-100775607	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv882473	chr5:100263707-100532885	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv882474	chr5:100263707-100537863	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv524773	chr5:100264350-100309166	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv525359	chr5:100264350-100349324	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv882475	chr5:100275313-100390864	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv882476	chr5:100275313-100404802	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv969203	chr5:100280120-100285151	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:100282800-100283600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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