Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10074333	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11743896	0.81[EUR][1000 genomes]
rs11957210	0.82[EUR][1000 genomes]
rs13359678	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35639200	0.81[EUR][1000 genomes]
rs35968122	0.80[EUR][1000 genomes]
rs4072596	0.81[EUR][1000 genomes]
rs4075651	0.81[EUR][1000 genomes]
rs4128455	0.81[EUR][1000 genomes]
rs55644441	0.81[EUR][1000 genomes]
rs55882634	0.81[EUR][1000 genomes]
rs56188359	0.81[EUR][1000 genomes]
rs56195293	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59162280	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62360010	0.82[EUR][1000 genomes]
rs62360012	0.82[EUR][1000 genomes]
rs62360043	0.82[EUR][1000 genomes]
rs62360044	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67714081	0.81[EUR][1000 genomes]
rs72799320	0.80[EUR][1000 genomes]
rs72799326	0.82[EUR][1000 genomes]
rs7443656	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7707077	0.81[EUR][1000 genomes]
rs7707136	0.81[EUR][1000 genomes]
rs7707794	0.81[EUR][1000 genomes]
rs7720364	0.81[EUR][1000 genomes]
rs7722651	0.81[EUR][1000 genomes]
rs7734836	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv882690	chr5:107834247-107954485	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107857400-107890800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:107885000-107890800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr5:107885000-107891000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr5:107885200-107890800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr5:107885600-107891000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr5:107889200-107889800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr5:107889400-107890000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:107889400-107890000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr5:107889600-107890000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr5:107889600-107890600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr5:107889600-107891200	Enhancers	K562	blood
12	chr5:107889600-107891400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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