Variant report

Variant	rs10074333
Chromosome Location	chr5:107884482-107884483
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10515390	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11743896	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11957210	0.87[EUR][1000 genomes]
rs13359678	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35639200	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4072596	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4075651	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4128455	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55644441	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55679052	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55882634	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56188359	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56195293	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58634108	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59162280	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60898586	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61356246	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62360000	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62360002	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62360003	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62360007	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62360009	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62360010	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62360012	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62360043	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62360044	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67714081	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6861718	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72799320	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72799326	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7443656	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7707077	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7707136	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7707794	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7720364	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7722651	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7734836	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv882690	chr5:107834247-107954485	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107857400-107890800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:107872000-107884800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:107880200-107885000	Enhancers	Fetal Stomach	stomach
4	chr5:107880400-107889600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr5:107883200-107885000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr5:107883400-107884800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr5:107883400-107885000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:107883400-107885000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:107883400-107885400	Enhancers	K562	blood
10	chr5:107883600-107885200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr5:107883800-107885000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr5:107884200-107885000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr5:107884400-107884800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:107884400-107884800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr5:107884400-107885000	Enhancers	H1 Cell Line	embryonic stem cell
16	chr5:107884400-107885000	Enhancers	Thymus	Thymus
17	chr5:107884400-107885400	Enhancers	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links