Variant report

Variant	rs6861718
Chromosome Location	chr5:107853869-107853870
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10074333	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10515390	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11743896	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11957210	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13359678	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35639200	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4072596	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4075651	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4128455	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55644441	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55679052	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55882634	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56188359	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58634108	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59162280	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61356246	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360000	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62360002	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360007	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360009	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360010	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360012	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360043	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360044	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66794762	0.92[EUR][1000 genomes]
rs67714081	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799320	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799326	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7443656	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7707077	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7707136	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7707794	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7714342	0.80[MEX][hapmap]
rs7720364	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7722651	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7734836	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv882690	chr5:107834247-107954485	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107852000-107854000	Enhancers	Fetal Intestine Small	intestine
2	chr5:107852600-107856800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr5:107853200-107854000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr5:107853200-107859200	Weak transcription	Fetal Intestine Large	intestine
5	chr5:107853400-107854000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr5:107853400-107857200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:107853800-107854400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:107853800-107856600	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links