Variant report

Variant	rs11743896
Chromosome Location	chr5:107874127-107874128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10074333	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10515390	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11957210	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13359678	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35639200	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4072596	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4075651	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4128455	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55644441	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55679052	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55882634	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56188359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58634108	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59162280	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60898586	0.81[EUR][1000 genomes]
rs61356246	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360000	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62360002	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360003	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360007	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360009	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360010	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360012	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360043	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360044	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66794762	0.90[EUR][1000 genomes]
rs67714081	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6861718	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799320	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799326	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7443656	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7707077	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7707136	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7707794	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7720364	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7722651	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7734836	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv882690	chr5:107834247-107954485	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107857400-107890800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:107872000-107884800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:107873200-107874800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr5:107873400-107874400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:107873400-107874800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr5:107873400-107874800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr5:107873400-107875000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:107873400-107875000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:107873400-107875000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr5:107873400-107875200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:107873600-107874600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr5:107873600-107874800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr5:107873600-107875200	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr5:107873600-107878800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr5:107873600-107883200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr5:107874000-107874400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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