Variant report

Variant	rs59162280
Chromosome Location	chr5:107866292-107866293
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10074333	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10515390	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11743896	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11957210	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13359678	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35639200	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4072596	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4075651	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4128455	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55644441	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55679052	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55882634	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56188359	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56195293	0.84[AMR][1000 genomes]
rs58634108	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60898586	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61356246	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62360000	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62360002	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62360003	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62360007	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62360009	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62360010	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62360012	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62360043	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62360044	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs66794762	0.89[EUR][1000 genomes]
rs67714081	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6861718	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72799320	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72799326	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7443656	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7707077	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7707136	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7707794	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7720364	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7722651	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7734836	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv882690	chr5:107834247-107954485	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107857400-107890800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:107863400-107866800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:107863400-107873400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:107865200-107867000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr5:107865400-107866600	ZNF genes & repeats	K562	blood
6	chr5:107865400-107867200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:107865600-107866600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr5:107865600-107867000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:107865600-107867000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:107865600-107867200	Weak transcription	Osteobl	bone
11	chr5:107866000-107869200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:107866200-107866600	Active TSS	Fetal Heart	heart
13	chr5:107866200-107868600	ZNF genes & repeats	Fetal Intestine Small	intestine

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