Variant report

Variant	rs58634108
Chromosome Location	chr5:107857668-107857669
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107857631..107858195-chr5:107977739..107978434,2	MCF-7	breast:
2	chr5:107856773..107859561-chr5:108084375..108085888,2	K562	blood:

Variant related genes	Relation type
ENSG00000151422	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10074333	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10515390	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11743896	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11957210	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13359678	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35639200	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4072596	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4075651	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4128455	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55644441	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55679052	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55882634	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56188359	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56195293	0.81[AMR][1000 genomes]
rs59162280	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61356246	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360000	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62360002	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360003	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360007	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360009	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360010	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360012	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360043	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62360044	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66794762	0.90[EUR][1000 genomes]
rs67714081	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6861718	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799320	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799326	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7443656	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7707077	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7707136	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7707794	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7720364	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7722651	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7734836	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv882690	chr5:107834247-107954485	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107853200-107859200	Weak transcription	Fetal Intestine Large	intestine
2	chr5:107856200-107858200	Enhancers	Primary B cells from peripheral blood	blood
3	chr5:107856400-107858000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr5:107856600-107858000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr5:107856600-107858200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr5:107856600-107858200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:107856800-107858000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr5:107856800-107858000	Enhancers	K562	blood
9	chr5:107856800-107858200	Enhancers	Duodenum Mucosa	Duodenum
10	chr5:107857000-107858200	Enhancers	H9 Cell Line	embryonic stem cell
11	chr5:107857200-107859800	Enhancers	Fetal Intestine Small	intestine
12	chr5:107857400-107860800	Enhancers	GM12878-XiMat	blood
13	chr5:107857400-107863200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr5:107857400-107890800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr5:107857600-107860600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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