Variant report

Variant	rs609146
Chromosome Location	chr6:150685459-150685460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs2064214	0.93[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4869902	0.89[ASN][1000 genomes]
rs4870501	0.89[ASN][1000 genomes]
rs4870502	0.89[ASN][1000 genomes]
rs588036	0.92[CEU][hapmap];0.93[CHB][hapmap];0.93[GIH][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs606775	0.81[EUR][1000 genomes]
rs608175	0.81[CEU][hapmap]
rs627147	0.81[EUR][1000 genomes]
rs633945	0.92[CEU][hapmap];0.82[MEX][hapmap];0.80[TSI][hapmap];0.81[EUR][1000 genomes]
rs634686	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs640074	0.81[CEU][hapmap]
rs641944	0.96[ASN][1000 genomes]
rs649613	0.81[EUR][1000 genomes]
rs651777	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs654116	1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs654928	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs655254	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs655401	1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs666147	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs670292	0.92[CEU][hapmap];0.82[MEX][hapmap];0.80[TSI][hapmap];0.81[EUR][1000 genomes]
rs671753	1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs672766	0.92[CEU][hapmap]
rs679249	0.92[CEU][hapmap];0.93[CHB][hapmap];0.93[GIH][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs685969	0.96[ASN][1000 genomes]
rs6906028	0.84[CEU][hapmap]
rs6930467	0.89[ASN][1000 genomes]
rs6930494	0.93[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs694326	0.81[EUR][1000 genomes]
rs73615887	0.92[ASN][1000 genomes]
rs7738727	0.90[ASN][1000 genomes]
rs7757225	0.81[CEU][hapmap]
rs7771338	0.93[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs7772011	0.81[CEU][hapmap]
rs9322260	0.88[CEU][hapmap]
rs9384449	0.89[ASN][1000 genomes]
rs9397289	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150684600-150686400	Weak transcription	Ovary	ovary

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