Variant report
Variant | rs9384449 |
---|---|
Chromosome Location | chr6:150683395-150683396 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr6:150673415..150676875-chr6:150682312..150685340,3 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs2064214 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.97[ASN][1000 genomes] |
rs4869902 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4870501 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4870502 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs588036 | 0.87[CHB][hapmap] |
rs609146 | 0.93[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes] |
rs634686 | 0.84[ASN][1000 genomes] |
rs641944 | 0.92[ASN][1000 genomes] |
rs651777 | 0.81[ASN][1000 genomes] |
rs654116 | 0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
rs654928 | 0.92[ASN][1000 genomes] |
rs655254 | 0.92[ASN][1000 genomes] |
rs655401 | 0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
rs671753 | 0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
rs679249 | 0.87[CHB][hapmap] |
rs685969 | 0.92[ASN][1000 genomes] |
rs6930467 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6930494 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73615887 | 0.97[ASN][1000 genomes] |
rs7738727 | 0.99[ASN][1000 genomes] |
rs7771338 | 0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9397289 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv830843 | chr6:150517411-150691173 | Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
2 | esv2763602 | chr6:150581193-150720666 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:150683000-150684400 | Weak transcription | Ovary | ovary |
2 | chr6:150683200-150683400 | Enhancers | Fetal Muscle Leg | muscle |