Variant report

Variant	rs651777
Chromosome Location	chr6:150696699-150696700
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150664294..150666420-chr6:150694752..150697036,2	MCF-7	breast:
2	chr6:150688621..150691122-chr6:150696255..150698510,2	K562	blood:

Variant related genes	Relation type
ENSG00000009765	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs2064214	0.83[ASN][1000 genomes]
rs4869902	0.81[ASN][1000 genomes]
rs4870501	0.81[ASN][1000 genomes]
rs4870502	0.81[ASN][1000 genomes]
rs581697	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs588036	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs606775	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs609146	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs623252	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs627147	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs633945	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs634686	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs641944	0.87[ASN][1000 genomes]
rs649613	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs654116	0.87[ASN][1000 genomes]
rs654928	0.87[ASN][1000 genomes]
rs655254	0.87[ASN][1000 genomes]
rs655401	0.87[ASN][1000 genomes]
rs655745	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs666147	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs670292	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs671753	0.87[ASN][1000 genomes]
rs672766	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs679249	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs685969	0.87[ASN][1000 genomes]
rs6906229	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6930467	0.81[ASN][1000 genomes]
rs6930494	0.81[ASN][1000 genomes]
rs694326	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73615887	0.83[ASN][1000 genomes]
rs7738727	0.81[ASN][1000 genomes]
rs7771338	0.81[ASN][1000 genomes]
rs805989	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs805991	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs805992	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9384449	0.81[ASN][1000 genomes]
rs9397289	0.81[ASN][1000 genomes]
rs9480339	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9480340	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150691000-150698200	Weak transcription	Stomach Mucosa	stomach
2	chr6:150691600-150700200	Weak transcription	Lung	lung
3	chr6:150692200-150698200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:150693200-150698400	Weak transcription	Fetal Intestine Large	intestine
5	chr6:150693400-150698000	Weak transcription	Fetal Intestine Small	intestine
6	chr6:150693400-150698400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:150694000-150698200	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:150694800-150698200	Weak transcription	Right Atrium	heart
9	chr6:150694800-150698400	Weak transcription	Adipose Nuclei	Adipose
10	chr6:150694800-150698400	Weak transcription	Fetal Lung	lung
11	chr6:150695000-150697200	Weak transcription	Liver	Liver
12	chr6:150695000-150698200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr6:150695000-150698400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:150695200-150698400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:150695400-150698200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:150695400-150698600	Weak transcription	NHDF-Ad	bronchial
17	chr6:150695400-150703400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:150695600-150696800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr6:150696000-150698400	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links