Variant report
| Variant | rs6930494 |
|---|---|
| Chromosome Location | chr6:150681188-150681189 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:150679855..150682122-chr6:150688615..150690541,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000009765 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs2064214 | 1.00[CHB][hapmap];0.91[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs4869902 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4870501 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4870502 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs588036 | 0.87[CHB][hapmap] |
| rs609146 | 0.93[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs634686 | 0.84[ASN][1000 genomes] |
| rs641944 | 0.92[ASN][1000 genomes] |
| rs651777 | 0.81[ASN][1000 genomes] |
| rs654116 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs654928 | 0.92[ASN][1000 genomes] |
| rs655254 | 0.92[ASN][1000 genomes] |
| rs655401 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs671753 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs679249 | 0.87[CHB][hapmap] |
| rs685969 | 0.92[ASN][1000 genomes] |
| rs6930467 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73615887 | 0.97[ASN][1000 genomes] |
| rs7738727 | 0.99[ASN][1000 genomes] |
| rs7771338 | 0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9384449 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9397289 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830843 | chr6:150517411-150691173 | Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| 2 | esv2763602 | chr6:150581193-150720666 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
