Variant report

Variant	rs60991951
Chromosome Location	chr5:41107398-41107399
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10512759	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1423415	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1423416	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56192818	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57772697	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58130855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59337747	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60122677	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60970695	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6451562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6451564	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6863074	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6867676	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6880310	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6880316	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6884328	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6884665	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6888861	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6897308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6898868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs731705	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750244	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750245	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750253	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750255	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750257	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750258	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750259	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750264	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750266	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750267	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750268	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750287	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7707176	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7707908	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7708113	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7711400	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7722913	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7723054	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830268	chr5:40897361-41138366	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41104800-41111600	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links