Variant report

Variant	rs6888861
Chromosome Location	chr5:41095467-41095468
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10512759	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1423412	0.80[AFR][1000 genomes]
rs1423415	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1423416	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16870766	1.00[YRI][hapmap]
rs16870767	1.00[YRI][hapmap]
rs4422567	0.80[AFR][1000 genomes]
rs56165209	0.82[AFR][1000 genomes]
rs56192818	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57772697	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58130855	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59337747	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60122677	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60970695	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60991951	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6451562	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6451564	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6863074	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6867676	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6870367	0.87[YRI][hapmap]
rs6872142	0.82[YRI][hapmap]
rs6880310	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6880316	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6884328	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6884665	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6897308	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6898868	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs731705	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750244	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750245	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750248	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750249	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750253	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750255	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750257	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750258	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750259	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750264	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750266	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750267	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750268	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750287	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750293	0.82[AFR][1000 genomes]
rs73750294	0.80[AFR][1000 genomes]
rs7707176	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7707908	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7708113	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7711400	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7722913	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7723054	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830268	chr5:40897361-41138366	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41092000-41097600	Weak transcription	Right Ventricle	heart
2	chr5:41093400-41096600	Enhancers	Fetal Heart	heart
3	chr5:41094000-41096400	Weak transcription	Left Ventricle	heart
4	chr5:41094200-41096400	Enhancers	Ovary	ovary
5	chr5:41094800-41095600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:41095200-41095600	Enhancers	A549	lung
7	chr5:41095200-41095600	Enhancers	Hela-S3	cervix
8	chr5:41095200-41095600	Enhancers	HepG2	liver
9	chr5:41095200-41096400	Weak transcription	Right Atrium	heart
10	chr5:41095400-41096400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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