Variant report

Variant	rs6880316
Chromosome Location	chr5:41119235-41119236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10512759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1423412	0.82[AFR][1000 genomes]
rs1423415	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1423416	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4422567	0.82[AFR][1000 genomes]
rs56165209	0.83[AFR][1000 genomes]
rs56192818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57772697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58130855	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59337747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60122677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60970695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60991951	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6451562	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6451564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6863074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6867676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6880310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6884328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6884665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6888861	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6897308	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6898868	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs731705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750244	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750245	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750248	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750249	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750293	0.83[AFR][1000 genomes]
rs73750294	0.82[AFR][1000 genomes]
rs7707176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7707908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7708113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7711400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7722913	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7723054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830268	chr5:40897361-41138366	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv968825	chr5:41115701-41120789	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41116400-41128400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:41117400-41121200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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