Variant report

Variant	rs73750244
Chromosome Location	chr5:41087609-41087610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:41082918..41084564-chr5:41086749..41089666,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10512759	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1423415	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1423416	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56192818	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57772697	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58130855	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59337747	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60122677	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60970695	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60991951	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6451562	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6451564	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6863074	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6867676	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6880310	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6880316	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6884328	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6884665	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6888861	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6897308	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6898868	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs731705	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750248	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750249	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750253	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750255	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750257	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750258	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750259	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750264	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750266	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750267	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750268	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750287	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7707176	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7707908	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7708113	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7711400	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7722913	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7723054	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830268	chr5:40897361-41138366	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41086800-41088200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:41087000-41088400	Enhancers	Fetal Heart	heart
3	chr5:41087200-41088200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:41087600-41088400	Enhancers	NH-A	brain

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