Variant report

Variant	rs61098166
Chromosome Location	chr13:51785729-51785730
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11838593	0.83[AFR][1000 genomes]
rs11841027	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11843433	0.88[AFR][1000 genomes]
rs11843804	0.88[AFR][1000 genomes]
rs11843842	0.88[AFR][1000 genomes]
rs57325570	0.88[AFR][1000 genomes]
rs57546351	0.83[AFR][1000 genomes]
rs57856090	0.88[AFR][1000 genomes]
rs57873646	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58286739	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59146135	0.88[AFR][1000 genomes]
rs59816449	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61041802	0.88[AFR][1000 genomes]
rs61075891	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7317441	0.88[AFR][1000 genomes]
rs7323723	0.88[AFR][1000 genomes]
rs7324083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7333250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488064	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488066	0.83[AFR][1000 genomes]
rs73488070	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488072	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488073	0.82[AFR][1000 genomes]
rs73488076	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488080	0.88[AFR][1000 genomes]
rs73488091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488094	0.88[AFR][1000 genomes]
rs73490136	0.85[AFR][1000 genomes]
rs7997296	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7997385	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9316522	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51774400-51785800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:51783600-51786000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr13:51783600-51786000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr13:51783600-51786200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr13:51783800-51786000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr13:51784200-51786000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr13:51785400-51787000	Enhancers	H9 Cell Line	embryonic stem cell
8	chr13:51785400-51787400	Enhancers	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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