Variant report

Variant	rs57873646
Chromosome Location	chr13:51776608-51776609
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11838593	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11841027	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11841154	1.00[EUR][1000 genomes]
rs11843433	0.86[AFR][1000 genomes]
rs11843804	0.89[AFR][1000 genomes]
rs11843842	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1475378	1.00[EUR][1000 genomes]
rs57011760	1.00[EUR][1000 genomes]
rs57325570	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57546351	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57856090	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58004754	1.00[EUR][1000 genomes]
rs58286739	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58791839	1.00[EUR][1000 genomes]
rs58955860	1.00[EUR][1000 genomes]
rs59146135	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59439755	1.00[EUR][1000 genomes]
rs59488627	1.00[EUR][1000 genomes]
rs59816449	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61016784	1.00[EUR][1000 genomes]
rs61041802	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61075891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61098166	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61520022	1.00[EUR][1000 genomes]
rs61539526	1.00[EUR][1000 genomes]
rs7317441	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7323479	1.00[EUR][1000 genomes]
rs7323723	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7324083	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7333250	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488042	1.00[EUR][1000 genomes]
rs73488047	1.00[EUR][1000 genomes]
rs73488050	1.00[EUR][1000 genomes]
rs73488064	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488066	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73488070	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488072	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488073	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73488076	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488080	0.86[AFR][1000 genomes]
rs73488091	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488094	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73488097	1.00[EUR][1000 genomes]
rs73490136	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73490138	1.00[EUR][1000 genomes]
rs73490144	1.00[EUR][1000 genomes]
rs73490186	1.00[EUR][1000 genomes]
rs73490189	1.00[EUR][1000 genomes]
rs73490197	1.00[EUR][1000 genomes]
rs73492203	1.00[EUR][1000 genomes]
rs7994215	1.00[EUR][1000 genomes]
rs7997296	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7997385	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9316538	1.00[EUR][1000 genomes]
rs9596451	1.00[EUR][1000 genomes]
rs9596500	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51774400-51785800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:51776200-51777800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr13:51776200-51777800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr13:51776200-51778000	Enhancers	HUVEC	blood vessel
5	chr13:51776600-51776800	Enhancers	NHDF-Ad	bronchial
6	chr13:51776600-51777200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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