Variant report

Variant	rs73492203
Chromosome Location	chr13:51855043-51855044
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51846623..51849523-chr13:51854210..51856738,2	K562	blood:
2	chr13:51848648..51850306-chr13:51854222..51856639,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11838593	1.00[EUR][1000 genomes]
rs11841027	1.00[EUR][1000 genomes]
rs11841154	1.00[EUR][1000 genomes]
rs11843842	1.00[EUR][1000 genomes]
rs1475378	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57011760	1.00[EUR][1000 genomes]
rs57325570	1.00[EUR][1000 genomes]
rs57546351	1.00[EUR][1000 genomes]
rs57856090	1.00[EUR][1000 genomes]
rs57873646	1.00[EUR][1000 genomes]
rs58004754	1.00[EUR][1000 genomes]
rs58286739	1.00[EUR][1000 genomes]
rs58791839	1.00[EUR][1000 genomes]
rs58955860	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59146135	1.00[EUR][1000 genomes]
rs59439755	1.00[EUR][1000 genomes]
rs59488627	1.00[EUR][1000 genomes]
rs59816449	1.00[EUR][1000 genomes]
rs61016784	1.00[EUR][1000 genomes]
rs61041802	1.00[EUR][1000 genomes]
rs61075891	1.00[EUR][1000 genomes]
rs61520022	1.00[EUR][1000 genomes]
rs61539526	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7317441	1.00[EUR][1000 genomes]
rs7323479	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7323723	1.00[EUR][1000 genomes]
rs7324083	1.00[EUR][1000 genomes]
rs7333250	1.00[EUR][1000 genomes]
rs73488042	1.00[EUR][1000 genomes]
rs73488047	1.00[EUR][1000 genomes]
rs73488050	1.00[EUR][1000 genomes]
rs73488064	1.00[EUR][1000 genomes]
rs73488066	1.00[EUR][1000 genomes]
rs73488070	1.00[EUR][1000 genomes]
rs73488073	1.00[EUR][1000 genomes]
rs73488076	1.00[EUR][1000 genomes]
rs73488091	1.00[EUR][1000 genomes]
rs73488094	1.00[EUR][1000 genomes]
rs73488097	1.00[EUR][1000 genomes]
rs73490136	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73490138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73490144	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73490160	1.00[AMR][1000 genomes]
rs73490161	1.00[AMR][1000 genomes]
rs73490165	1.00[AMR][1000 genomes]
rs73490186	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73490189	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73490197	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7987480	1.00[EUR][1000 genomes]
rs7994215	1.00[EUR][1000 genomes]
rs7997296	1.00[EUR][1000 genomes]
rs7997385	1.00[EUR][1000 genomes]
rs9316538	1.00[EUR][1000 genomes]
rs9596451	1.00[EUR][1000 genomes]
rs9596500	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51833600-51860400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr13:51834200-51856400	Weak transcription	Gastric	stomach
3	chr13:51837800-51860400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:51841200-51858000	Weak transcription	Fetal Muscle Leg	muscle
5	chr13:51841600-51857600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr13:51846400-51866400	Weak transcription	Fetal Brain Male	brain
7	chr13:51846600-51865600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr13:51846600-51865600	Weak transcription	Fetal Lung	lung
9	chr13:51850200-51865600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr13:51850800-51856600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr13:51851000-51856600	Weak transcription	Right Atrium	heart
12	chr13:51851000-51866400	Weak transcription	Adipose Nuclei	Adipose
13	chr13:51851200-51856200	Weak transcription	Liver	Liver
14	chr13:51851200-51856400	Weak transcription	Pancreas	Pancrea
15	chr13:51851200-51865600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr13:51852200-51855600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr13:51852200-51856600	Strong transcription	Fetal Brain Female	brain
18	chr13:51852400-51855400	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr13:51852600-51856800	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr13:51852600-51856800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr13:51853000-51860400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr13:51853000-51889600	Weak transcription	Brain Angular Gyrus	brain
23	chr13:51853200-51856400	Weak transcription	Colon Smooth Muscle	Colon
24	chr13:51853200-51860400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr13:51853600-51855200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr13:51853600-51855800	Strong transcription	Brain Germinal Matrix	brain
27	chr13:51853800-51855400	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr13:51853800-51856400	Weak transcription	Rectal Smooth Muscle	rectum
29	chr13:51853800-51856800	Strong transcription	H9 Cell Line	embryonic stem cell
30	chr13:51853800-51858200	Weak transcription	Brain Anterior Caudate	brain
31	chr13:51854200-51855600	Strong transcription	Spleen	Spleen
32	chr13:51854200-51856200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr13:51854200-51856600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
34	chr13:51854400-51855400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr13:51854400-51855400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr13:51854400-51855400	Genic enhancers	Right Ventricle	heart
37	chr13:51854400-51855600	Genic enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr13:51854400-51856000	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr13:51854400-51857000	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr13:51854600-51855200	Enhancers	Left Ventricle	heart
41	chr13:51854600-51855400	Strong transcription	Aorta	Aorta
42	chr13:51854600-51855600	Strong transcription	Fetal Stomach	stomach
43	chr13:51854600-51855600	Strong transcription	Lung	lung
44	chr13:51854600-51866800	Weak transcription	Stomach Mucosa	stomach
45	chr13:51854800-51855400	Genic enhancers	H1 Cell Line	embryonic stem cell
46	chr13:51854800-51855400	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr13:51854800-51856200	Weak transcription	Fetal Heart	heart
48	chr13:51854800-51856400	Strong transcription	Brain Hippocampus Middle	brain
49	chr13:51854800-51859400	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr13:51855000-51855400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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