Variant report

Variant	rs11843842
Chromosome Location	chr13:51777845-51777846
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11838593	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11841027	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11841154	1.00[EUR][1000 genomes]
rs11843433	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11843804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1475378	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs17075302	1.00[MEX][hapmap]
rs17075305	1.00[MEX][hapmap]
rs57011760	1.00[EUR][1000 genomes]
rs57325570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57546351	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57856090	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57873646	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58004754	1.00[EUR][1000 genomes]
rs58286739	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58791839	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58955860	1.00[EUR][1000 genomes]
rs59146135	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59439755	1.00[EUR][1000 genomes]
rs59488627	1.00[EUR][1000 genomes]
rs59816449	1.00[EUR][1000 genomes]
rs61016784	1.00[EUR][1000 genomes]
rs61041802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61075891	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61098166	0.88[AFR][1000 genomes]
rs61520022	1.00[EUR][1000 genomes]
rs61539526	1.00[EUR][1000 genomes]
rs7317441	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7323479	0.89[ASW][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs7323723	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7324083	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7333250	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73488042	1.00[EUR][1000 genomes]
rs73488047	1.00[EUR][1000 genomes]
rs73488050	1.00[EUR][1000 genomes]
rs73488064	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73488066	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488070	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73488073	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488076	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73488080	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488091	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73488094	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488097	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73490136	1.00[EUR][1000 genomes]
rs73490138	1.00[EUR][1000 genomes]
rs73490144	1.00[EUR][1000 genomes]
rs73490186	1.00[EUR][1000 genomes]
rs73490189	1.00[EUR][1000 genomes]
rs73490197	1.00[EUR][1000 genomes]
rs73492203	1.00[EUR][1000 genomes]
rs7994215	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7997296	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7997385	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9316538	1.00[EUR][1000 genomes]
rs9596451	1.00[EUR][1000 genomes]
rs9596500	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51774400-51785800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:51776200-51778000	Enhancers	HUVEC	blood vessel

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