Variant report

Variant	rs11843433
Chromosome Location	chr13:51767682-51767683
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11838593	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11841027	0.89[AFR][1000 genomes]
rs11843804	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11843842	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57325570	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57546351	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57856090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57873646	0.86[AFR][1000 genomes]
rs58286739	0.89[AFR][1000 genomes]
rs58791839	0.83[AMR][1000 genomes]
rs59146135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61041802	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61075891	0.86[AFR][1000 genomes]
rs61098166	0.88[AFR][1000 genomes]
rs7317441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7323723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7324083	0.88[AFR][1000 genomes]
rs7333250	0.88[AFR][1000 genomes]
rs73488064	0.84[AFR][1000 genomes]
rs73488066	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488070	0.84[AFR][1000 genomes]
rs73488072	1.00[EUR][1000 genomes]
rs73488073	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488076	0.86[AFR][1000 genomes]
rs73488080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488091	0.88[AFR][1000 genomes]
rs73488094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488097	0.83[AMR][1000 genomes]
rs7994215	0.83[AMR][1000 genomes]
rs7997296	0.89[AFR][1000 genomes]
rs7997385	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv523778	chr13:51755107-51768501	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51754600-51770000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:51759000-51767800	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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