Variant report

Variant	rs58791839
Chromosome Location	chr13:51743732-51743733
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11838593	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11841027	1.00[EUR][1000 genomes]
rs11841154	1.00[EUR][1000 genomes]
rs11843433	0.83[AMR][1000 genomes]
rs11843804	0.83[AMR][1000 genomes]
rs11843842	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1475378	1.00[EUR][1000 genomes]
rs57011760	1.00[EUR][1000 genomes]
rs57325570	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57546351	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57856090	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57873646	1.00[EUR][1000 genomes]
rs58004754	1.00[EUR][1000 genomes]
rs58286739	1.00[EUR][1000 genomes]
rs58955860	1.00[EUR][1000 genomes]
rs59146135	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59439755	1.00[EUR][1000 genomes]
rs59488627	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59816449	1.00[EUR][1000 genomes]
rs61016784	1.00[EUR][1000 genomes]
rs61041802	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61075891	1.00[EUR][1000 genomes]
rs61520022	1.00[EUR][1000 genomes]
rs61539526	1.00[EUR][1000 genomes]
rs7317441	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7323479	1.00[EUR][1000 genomes]
rs7323723	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7324083	1.00[EUR][1000 genomes]
rs7333250	1.00[EUR][1000 genomes]
rs73488042	1.00[EUR][1000 genomes]
rs73488047	1.00[EUR][1000 genomes]
rs73488050	1.00[EUR][1000 genomes]
rs73488064	1.00[EUR][1000 genomes]
rs73488066	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488070	1.00[EUR][1000 genomes]
rs73488073	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488076	1.00[EUR][1000 genomes]
rs73488080	0.83[AMR][1000 genomes]
rs73488091	1.00[EUR][1000 genomes]
rs73488094	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73488097	1.00[EUR][1000 genomes]
rs73490136	1.00[EUR][1000 genomes]
rs73490138	1.00[EUR][1000 genomes]
rs73490144	1.00[EUR][1000 genomes]
rs73490186	1.00[EUR][1000 genomes]
rs73490189	1.00[EUR][1000 genomes]
rs73490197	1.00[EUR][1000 genomes]
rs73492203	1.00[EUR][1000 genomes]
rs7994215	1.00[EUR][1000 genomes]
rs7997296	1.00[EUR][1000 genomes]
rs7997385	1.00[EUR][1000 genomes]
rs9596451	1.00[EUR][1000 genomes]
rs9596500	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv900080	chr13:51711436-51754873	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51729000-51749200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr13:51739800-51752800	Weak transcription	Right Atrium	heart
3	chr13:51742600-51744000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
4	chr13:51743000-51744000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr13:51743200-51744000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr13:51743200-51744000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr13:51743200-51744200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr13:51743200-51748400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr13:51743400-51744000	Enhancers	Fetal Brain Female	brain
10	chr13:51743400-51745000	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr13:51743400-51746400	Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr13:51743400-51747400	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr13:51743400-51747600	Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr13:51743400-51747800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr13:51743600-51743800	Active TSS	H1 Cell Line	embryonic stem cell
16	chr13:51743600-51743800	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr13:51743600-51743800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
18	chr13:51743600-51744000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr13:51743600-51744000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
20	chr13:51743600-51744000	Bivalent Enhancer	Fetal Muscle Leg	muscle
21	chr13:51743600-51747600	Active TSS	HUES64 Cell Line	embryonic stem cell
22	chr13:51743600-51748000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr13:51743600-51749000	Active TSS	H9 Cell Line	embryonic stem cell
24	chr13:51743600-51749200	Active TSS	iPS-15b Cell Line	embryonic stem cell

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