Variant report

Variant	rs59439755
Chromosome Location	chr13:51730781-51730782
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51721200..51723188-chr13:51728041..51731012,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11838593	1.00[EUR][1000 genomes]
rs11841027	1.00[EUR][1000 genomes]
rs11841154	1.00[EUR][1000 genomes]
rs11843842	1.00[EUR][1000 genomes]
rs1475378	1.00[EUR][1000 genomes]
rs57011760	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57325570	1.00[EUR][1000 genomes]
rs57546351	1.00[EUR][1000 genomes]
rs57856090	1.00[EUR][1000 genomes]
rs57873646	1.00[EUR][1000 genomes]
rs58004754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58286739	1.00[EUR][1000 genomes]
rs58791839	1.00[EUR][1000 genomes]
rs58955860	1.00[EUR][1000 genomes]
rs59146135	1.00[EUR][1000 genomes]
rs59488627	1.00[EUR][1000 genomes]
rs59816449	1.00[EUR][1000 genomes]
rs61016784	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61041802	1.00[EUR][1000 genomes]
rs61075891	1.00[EUR][1000 genomes]
rs61520022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61539526	1.00[EUR][1000 genomes]
rs7317441	1.00[EUR][1000 genomes]
rs7323479	1.00[EUR][1000 genomes]
rs7323723	1.00[EUR][1000 genomes]
rs7324083	1.00[EUR][1000 genomes]
rs7333250	1.00[EUR][1000 genomes]
rs73488042	1.00[EUR][1000 genomes]
rs73488047	1.00[EUR][1000 genomes]
rs73488050	1.00[EUR][1000 genomes]
rs73488064	1.00[EUR][1000 genomes]
rs73488066	1.00[EUR][1000 genomes]
rs73488070	1.00[EUR][1000 genomes]
rs73488073	1.00[EUR][1000 genomes]
rs73488076	1.00[EUR][1000 genomes]
rs73488091	1.00[EUR][1000 genomes]
rs73488094	1.00[EUR][1000 genomes]
rs73488097	1.00[EUR][1000 genomes]
rs73490136	1.00[EUR][1000 genomes]
rs73490138	1.00[EUR][1000 genomes]
rs73490144	1.00[EUR][1000 genomes]
rs73490186	1.00[EUR][1000 genomes]
rs73490189	1.00[EUR][1000 genomes]
rs73490197	1.00[EUR][1000 genomes]
rs73492203	1.00[EUR][1000 genomes]
rs7994215	1.00[EUR][1000 genomes]
rs7997296	1.00[EUR][1000 genomes]
rs7997385	1.00[EUR][1000 genomes]
rs9596451	1.00[EUR][1000 genomes]
rs9596500	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv900079	chr13:51711436-51739168	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv900080	chr13:51711436-51754873	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51720600-51731600	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr13:51723200-51732600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:51724000-51732600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr13:51726400-51732600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:51727000-51731000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr13:51727000-51733800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr13:51727600-51732600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr13:51728200-51742600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr13:51728600-51731400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr13:51729000-51732600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr13:51729000-51733200	Weak transcription	NHDF-Ad	bronchial
12	chr13:51729000-51749200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr13:51729600-51730800	Enhancers	Fetal Muscle Leg	muscle
14	chr13:51729600-51731400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr13:51729800-51731200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr13:51730000-51731200	Enhancers	Spleen	Spleen
17	chr13:51730200-51731200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr13:51730200-51732000	Enhancers	H1 Cell Line	embryonic stem cell
19	chr13:51730400-51731200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr13:51730400-51731200	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr13:51730400-51734400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr13:51730600-51731200	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr13:51730600-51732600	Weak transcription	H9 Cell Line	embryonic stem cell

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