Variant report
Variant | rs73488097 |
---|---|
Chromosome Location | chr13:51765109-51765110 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:5)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:5 , 50 per page) page:
1
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | POLR2A | chr13:51765055-51765151 | H1-hESC | embryonic stem cell: | n/a | n/a |
2 | EP300 | chr13:51765007-51765292 | SK-N-SH_RA | brain: | n/a | n/a |
3 | EP300 | chr13:51764953-51765300 | SK-N-SH_RA | brain: | n/a | n/a |
4 | GATA2 | chr13:51764990-51765651 | SH-SY5Y | brain: | n/a | chr13:51765222-51765232 chr13:51765221-51765233 chr13:51765559-51765569 chr13:51765221-51765234 chr13:51765223-51765230 chr13:51765223-51765232 chr13:51765445-51765455 |
5 | GATA3 | chr13:51764739-51765263 | SH-SY5Y | brain: | n/a | chr13:51765222-51765232 chr13:51765221-51765233 chr13:51765221-51765234 chr13:51765223-51765230 chr13:51765223-51765232 |
No data |
No data |
(count:1 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-INTS6-2 | chr13:51764578-51765109 | XLOC_010616 |
No data |
No data |
Variant related genes | Relation type |
---|---|
SLMO2P2 | TF binding region |
rs_ID | r2[population] |
---|---|
rs11838593 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11841027 | 1.00[EUR][1000 genomes] |
rs11841154 | 0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11843433 | 0.83[AMR][1000 genomes] |
rs11843804 | 0.83[AMR][1000 genomes] |
rs11843842 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1475378 | 1.00[EUR][1000 genomes] |
rs57011760 | 1.00[EUR][1000 genomes] |
rs57325570 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs57546351 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs57856090 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs57873646 | 1.00[EUR][1000 genomes] |
rs58004754 | 1.00[EUR][1000 genomes] |
rs58286739 | 1.00[EUR][1000 genomes] |
rs58791839 | 1.00[EUR][1000 genomes] |
rs58955860 | 1.00[EUR][1000 genomes] |
rs59146135 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs59439755 | 1.00[EUR][1000 genomes] |
rs59488627 | 1.00[EUR][1000 genomes] |
rs59816449 | 1.00[EUR][1000 genomes] |
rs61016784 | 1.00[EUR][1000 genomes] |
rs61041802 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs61075891 | 1.00[EUR][1000 genomes] |
rs61520022 | 1.00[EUR][1000 genomes] |
rs61539526 | 1.00[EUR][1000 genomes] |
rs7317441 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7323479 | 1.00[EUR][1000 genomes] |
rs7323723 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7324083 | 1.00[EUR][1000 genomes] |
rs7333250 | 1.00[EUR][1000 genomes] |
rs73488042 | 1.00[EUR][1000 genomes] |
rs73488047 | 1.00[EUR][1000 genomes] |
rs73488050 | 1.00[EUR][1000 genomes] |
rs73488064 | 1.00[EUR][1000 genomes] |
rs73488066 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73488070 | 1.00[EUR][1000 genomes] |
rs73488073 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73488076 | 1.00[EUR][1000 genomes] |
rs73488080 | 0.83[AMR][1000 genomes] |
rs73488091 | 1.00[EUR][1000 genomes] |
rs73488094 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73490136 | 1.00[EUR][1000 genomes] |
rs73490138 | 1.00[EUR][1000 genomes] |
rs73490144 | 1.00[EUR][1000 genomes] |
rs73490186 | 1.00[EUR][1000 genomes] |
rs73490189 | 1.00[EUR][1000 genomes] |
rs73490197 | 1.00[EUR][1000 genomes] |
rs73492203 | 1.00[EUR][1000 genomes] |
rs7994215 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7997296 | 1.00[EUR][1000 genomes] |
rs7997385 | 1.00[EUR][1000 genomes] |
rs9316538 | 1.00[EUR][1000 genomes] |
rs9596451 | 1.00[EUR][1000 genomes] |
rs9596500 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv832610 | chr13:51636661-51822106 | Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv523778 | chr13:51755107-51768501 | Weak transcription Strong transcription Enhancers Genic enhancers | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr13:51750200-51767000 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
2 | chr13:51754000-51766000 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
3 | chr13:51754600-51770000 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
4 | chr13:51755000-51765600 | Weak transcription | HUES64 Cell Line | embryonic stem cell |
5 | chr13:51759000-51767800 | Weak transcription | H1 Cell Line | embryonic stem cell |
6 | chr13:51761800-51766200 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |