Variant report

Variant	rs61141784
Chromosome Location	chr7:126309400-126309401
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs2237770	1.00[AMR][1000 genomes]
rs2283077	1.00[AMR][1000 genomes]
rs2283078	1.00[AMR][1000 genomes]
rs2283081	1.00[AMR][1000 genomes]
rs58768465	1.00[AMR][1000 genomes]
rs59966379	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60356312	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60739229	1.00[AMR][1000 genomes]
rs61758766	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61758827	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6944201	1.00[AMR][1000 genomes]
rs73447010	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73447022	1.00[AMR][1000 genomes]
rs73447033	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73447039	0.86[AFR][1000 genomes]
rs73449023	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73449077	1.00[AMR][1000 genomes]
rs73449083	1.00[AMR][1000 genomes]
rs73449091	1.00[AMR][1000 genomes]
rs73449094	1.00[AMR][1000 genomes]
rs73449097	1.00[AMR][1000 genomes]
rs73449223	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73449233	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73449235	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73449236	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73449239	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73449240	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032108	chr7:126278349-126362592	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv5939	chr7:126279355-126322778	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126308000-126309600	Active TSS	Hela-S3	cervix
2	chr7:126308000-126309600	Active TSS	K562	blood
3	chr7:126308800-126311600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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