Variant report

Variant	rs61184728
Chromosome Location	chr4:20736103-20736104
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11931907	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11947118	0.82[AFR][1000 genomes]
rs57032556	1.00[AMR][1000 genomes]
rs59051779	1.00[AMR][1000 genomes]
rs59979250	1.00[AMR][1000 genomes]
rs61013057	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6832227	1.00[AMR][1000 genomes]
rs73101443	1.00[AMR][1000 genomes]
rs73101447	1.00[AMR][1000 genomes]
rs73101462	1.00[AMR][1000 genomes]
rs73101465	1.00[AMR][1000 genomes]
rs73101468	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73101469	1.00[AMR][1000 genomes]
rs73106096	1.00[AMR][1000 genomes]
rs73106097	1.00[AMR][1000 genomes]
rs73106099	1.00[AMR][1000 genomes]
rs73108113	1.00[AMR][1000 genomes]
rs73108121	1.00[AMR][1000 genomes]
rs73108132	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010145	chr4:20601908-21057992	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv537052	chr4:20601908-21057992	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1014941	chr4:20611726-21345226	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv537053	chr4:20611726-21345226	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv829876	chr4:20638736-20835621	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv869522	chr4:20724433-20938248	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20703000-20741400	Weak transcription	Stomach Mucosa	stomach
2	chr4:20703200-20741000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr4:20706800-20738600	Weak transcription	Psoas Muscle	Psoas
4	chr4:20707200-20739400	Weak transcription	HepG2	liver
5	chr4:20715400-20738600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr4:20715400-20739400	Weak transcription	Osteobl	bone
7	chr4:20718000-20738600	Weak transcription	NHDF-Ad	bronchial
8	chr4:20718200-20738400	Weak transcription	Fetal Heart	heart
9	chr4:20721800-20736400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:20721800-20737200	Strong transcription	Liver	Liver
11	chr4:20723000-20738400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr4:20724200-20737000	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr4:20724200-20738800	Weak transcription	Gastric	stomach
14	chr4:20724200-20738800	Weak transcription	Small Intestine	intestine
15	chr4:20724400-20736200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr4:20724400-20736200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr4:20724400-20737000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr4:20724400-20737000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr4:20724400-20738400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr4:20724400-20738800	Weak transcription	Esophagus	oesophagus
21	chr4:20724400-20738800	Weak transcription	HMEC	breast
22	chr4:20724400-20739000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr4:20724400-20739400	Weak transcription	Fetal Thymus	thymus
24	chr4:20724400-20739400	Weak transcription	Thymus	Thymus
25	chr4:20724400-20739400	Weak transcription	Spleen	Spleen
26	chr4:20724400-20740000	Weak transcription	GM12878-XiMat	blood
27	chr4:20724600-20739200	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr4:20724600-20742000	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr4:20724800-20736800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr4:20724800-20738600	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr4:20724800-20738600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr4:20724800-20738600	Weak transcription	Fetal Brain Male	brain
33	chr4:20724800-20738800	Weak transcription	Brain Substantia Nigra	brain
34	chr4:20724800-20741600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr4:20725000-20738200	Weak transcription	NHEK	skin
36	chr4:20725000-20738400	Weak transcription	A549	lung
37	chr4:20725000-20740600	Weak transcription	Colon Smooth Muscle	Colon
38	chr4:20725000-20753000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr4:20725200-20739200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr4:20725600-20738400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr4:20725600-20740000	Weak transcription	Brain Anterior Caudate	brain
42	chr4:20726000-20738800	Weak transcription	Right Ventricle	heart
43	chr4:20726000-20740000	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr4:20726200-20740400	Weak transcription	Colonic Mucosa	Colon
45	chr4:20726600-20738600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr4:20727200-20736800	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr4:20728400-20737200	Strong transcription	Primary T cells from cord blood	blood
48	chr4:20728800-20738200	Strong transcription	Duodenum Mucosa	Duodenum
49	chr4:20729800-20736200	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr4:20729800-20738600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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