Variant report

Variant	rs73101447
Chromosome Location	chr4:20673775-20673776
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:20673472..20675496-chr4:20701529..20703125,2	K562	blood:

Variant related genes	Relation type
ENSG00000163138	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11931907	1.00[AMR][1000 genomes]
rs57032556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59051779	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59979250	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61013057	1.00[AMR][1000 genomes]
rs61184728	1.00[AMR][1000 genomes]
rs6832227	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73101430	0.92[AFR][1000 genomes]
rs73101435	0.91[AFR][1000 genomes]
rs73101443	1.00[AMR][1000 genomes]
rs73101462	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73101465	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73101468	1.00[AMR][1000 genomes]
rs73101469	1.00[AMR][1000 genomes]
rs73106096	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73106097	1.00[AMR][1000 genomes]
rs73106099	1.00[AMR][1000 genomes]
rs73108113	1.00[AMR][1000 genomes]
rs73108121	1.00[AMR][1000 genomes]
rs73108132	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829875	chr4:20502895-20680956	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	89 gene(s)	inside rSNPs	diseases
2	nsv1013077	chr4:20599841-20732558	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1010145	chr4:20601908-21057992	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv537052	chr4:20601908-21057992	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1014941	chr4:20611726-21345226	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv537053	chr4:20611726-21345226	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv829876	chr4:20638736-20835621	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20654600-20673800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:20660000-20674000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:20669400-20673800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:20673400-20674400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr4:20673400-20674400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr4:20673400-20674800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:20673600-20674000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:20673600-20674000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr4:20673600-20674400	Enhancers	HUES64 Cell Line	embryonic stem cell

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