Variant report

Variant	rs73106096
Chromosome Location	chr4:20685190-20685191
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11931907	1.00[AMR][1000 genomes]
rs57032556	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59051779	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59979250	1.00[AMR][1000 genomes]
rs61013057	1.00[AMR][1000 genomes]
rs61184728	1.00[AMR][1000 genomes]
rs6832227	1.00[AMR][1000 genomes]
rs73101430	0.80[AFR][1000 genomes]
rs73101443	1.00[AMR][1000 genomes]
rs73101447	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73101462	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73101465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73101468	1.00[AMR][1000 genomes]
rs73101469	1.00[AMR][1000 genomes]
rs73106097	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73106099	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73108113	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73108121	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73108132	1.00[AMR][1000 genomes]
rs73110220	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013077	chr4:20599841-20732558	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1010145	chr4:20601908-21057992	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv537052	chr4:20601908-21057992	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1014941	chr4:20611726-21345226	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv537053	chr4:20611726-21345226	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv829876	chr4:20638736-20835621	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20684200-20687400	Enhancers	Fetal Lung	lung
2	chr4:20685000-20686200	Weak transcription	Fetal Stomach	stomach

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