Variant report

Variant	rs61185122
Chromosome Location	chr5:113642698-113642699
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11952816	0.83[AMR][1000 genomes]
rs1459779	1.00[AMR][1000 genomes]
rs6872421	1.00[AMR][1000 genomes]
rs73243723	1.00[AMR][1000 genomes]
rs73243744	1.00[AMR][1000 genomes]
rs73243748	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73243763	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73245983	1.00[AMR][1000 genomes]
rs73245984	1.00[AMR][1000 genomes]
rs73245987	1.00[AMR][1000 genomes]
rs73247805	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024203	chr5:113596392-113659935	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1021335	chr5:113599444-113659146	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv537866	chr5:113599444-113659146	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113637400-113643800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:113641400-113642800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr5:113641400-113642800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:113641400-113643000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr5:113641400-113643800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:113641400-113643800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr5:113641600-113644000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr5:113641800-113643000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr5:113641800-113643000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr5:113642000-113645800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr5:113642600-113645000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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