Variant report

Variant	rs73245987
Chromosome Location	chr5:113786737-113786738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11952816	0.83[AMR][1000 genomes]
rs1459779	1.00[AMR][1000 genomes]
rs61185122	1.00[AMR][1000 genomes]
rs6872421	1.00[AMR][1000 genomes]
rs73243723	1.00[AMR][1000 genomes]
rs73243744	1.00[AMR][1000 genomes]
rs73243748	1.00[AMR][1000 genomes]
rs73243763	1.00[AMR][1000 genomes]
rs73245983	1.00[AMR][1000 genomes]
rs73245984	1.00[AMR][1000 genomes]
rs73247805	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv882729	chr5:113743628-114497708	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113784000-113787200	Enhancers	Fetal Heart	heart
2	chr5:113784000-113787200	Enhancers	Fetal Muscle Leg	muscle
3	chr5:113786200-113787200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr5:113786200-113793200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:113786400-113787400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr5:113786400-113788000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr5:113786400-113788200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr5:113786400-113791600	Weak transcription	Brain Hippocampus Middle	brain
9	chr5:113786400-113793000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr5:113786400-113793000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr5:113786400-113793000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:113786600-113793200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr5:113786600-113793200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr5:113786600-113793400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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