Variant report

Variant	rs73243744
Chromosome Location	chr5:113644948-113644949
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11952816	0.83[AMR][1000 genomes]
rs1459779	1.00[AMR][1000 genomes]
rs61185122	1.00[AMR][1000 genomes]
rs6872421	1.00[AMR][1000 genomes]
rs73243723	1.00[AMR][1000 genomes]
rs73243748	1.00[AMR][1000 genomes]
rs73243763	1.00[AMR][1000 genomes]
rs73245983	1.00[AMR][1000 genomes]
rs73245984	1.00[AMR][1000 genomes]
rs73245987	1.00[AMR][1000 genomes]
rs73247805	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024203	chr5:113596392-113659935	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1021335	chr5:113599444-113659146	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv537866	chr5:113599444-113659146	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113642000-113645800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:113642600-113645000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:113643000-113645600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr5:113643200-113647800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr5:113644200-113646000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr5:113644200-113647200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr5:113644400-113645800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr5:113644400-113646000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr5:113644400-113647200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr5:113644400-113647600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr5:113644600-113645000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr5:113644600-113646400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr5:113644600-113647000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr5:113644600-113647400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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