Variant report

Variant	rs6872421
Chromosome Location	chr5:113784976-113784977
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11952816	0.83[AMR][1000 genomes]
rs1459779	1.00[AMR][1000 genomes]
rs61185122	1.00[AMR][1000 genomes]
rs73243723	1.00[AMR][1000 genomes]
rs73243744	1.00[AMR][1000 genomes]
rs73243748	1.00[AMR][1000 genomes]
rs73243763	1.00[AMR][1000 genomes]
rs73245983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73245984	1.00[AMR][1000 genomes]
rs73245987	1.00[AMR][1000 genomes]
rs73247805	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv882729	chr5:113743628-114497708	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113782200-113786400	Enhancers	Liver	Liver
2	chr5:113782600-113786200	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr5:113782600-113786400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:113782600-113786400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr5:113782800-113786400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr5:113782800-113786600	Enhancers	H1 Cell Line	embryonic stem cell
7	chr5:113783400-113785200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr5:113783800-113786400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr5:113783800-113786400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:113784000-113785000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr5:113784000-113785400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr5:113784000-113786000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr5:113784000-113786600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr5:113784000-113787200	Enhancers	Fetal Heart	heart
15	chr5:113784000-113787200	Enhancers	Fetal Muscle Leg	muscle
16	chr5:113784400-113786400	Enhancers	Fetal Stomach	stomach
17	chr5:113784600-113785200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr5:113784600-113786000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr5:113784800-113785000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr5:113784800-113785600	Enhancers	Fetal Brain Female	brain
21	chr5:113784800-113785800	Enhancers	Left Ventricle	heart
22	chr5:113784800-113785800	Enhancers	Placenta Amnion	Placenta Amnion
23	chr5:113784800-113785800	Active TSS	Stomach Smooth Muscle	stomach

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